Variant report

Variant	rs12666581
Chromosome Location	chr7:70783451-70783452
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10265527	0.90[EUR][1000 genomes]
rs10807731	0.90[EUR][1000 genomes]
rs10950257	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10950258	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11760210	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11970929	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12154884	0.91[EUR][1000 genomes]
rs12155139	0.89[EUR][1000 genomes]
rs12155491	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12155498	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12669906	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1922513	0.89[EUR][1000 genomes]
rs2091792	0.90[EUR][1000 genomes]
rs2107800	0.90[EUR][1000 genomes]
rs2527294	0.90[EUR][1000 genomes]
rs2707432	0.89[EUR][1000 genomes]
rs3973938	0.91[EUR][1000 genomes]
rs4270841	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4283926	0.89[AFR][1000 genomes];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4445102	0.89[EUR][1000 genomes]
rs4584034	0.90[EUR][1000 genomes]
rs4719110	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4719111	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4719113	0.90[EUR][1000 genomes]
rs4719114	0.88[EUR][1000 genomes]
rs4719116	0.89[EUR][1000 genomes]
rs6460650	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6460651	0.90[EUR][1000 genomes]
rs6460652	0.90[EUR][1000 genomes]
rs6460653	0.90[EUR][1000 genomes]
rs6944999	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6954049	0.84[EUR][1000 genomes]
rs6976592	0.90[EUR][1000 genomes]
rs7776752	0.88[EUR][1000 genomes]
rs7787338	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7787933	0.90[EUR][1000 genomes]
rs7788793	0.90[EUR][1000 genomes]
rs7797409	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9986885	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv519090	chr7:70085934-71071896	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1015261	chr7:70404302-71255933	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:70765800-70790000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr7:70773400-70789800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr7:70777000-70788800	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr7:70778800-70784400	Weak transcription	Brain Anterior Caudate	brain
5	chr7:70780800-70789200	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr7:70782400-70787400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr7:70783200-70785200	Weak transcription	HSMMtube	muscle

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