Variant report

Variant	rs4073529
Chromosome Location	chr7:70793258-70793259
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10226199	0.82[EUR][1000 genomes]
rs10256635	1.00[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10266560	1.00[CEU][hapmap];0.89[JPT][hapmap]
rs10272997	0.93[CEU][hapmap];0.89[JPT][hapmap]
rs12666910	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12668780	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12669285	0.81[EUR][1000 genomes]
rs12673556	0.86[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1574440	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1922527	1.00[CEU][hapmap];0.89[JPT][hapmap];0.82[EUR][1000 genomes]
rs2141885	0.86[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2527289	0.85[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2527291	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2527297	0.85[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs2527298	0.85[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2527312	0.85[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2867411	0.81[EUR][1000 genomes]
rs3923571	0.81[EUR][1000 genomes]
rs4270841	0.81[JPT][hapmap];0.81[ASN][1000 genomes]
rs4283926	0.81[ASN][1000 genomes]
rs4719110	0.80[JPT][hapmap]
rs6460650	0.80[JPT][hapmap]
rs6943983	0.82[JPT][hapmap]
rs6944999	0.80[JPT][hapmap]
rs6976591	0.89[JPT][hapmap]
rs73179792	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73181636	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73181639	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73181654	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73181662	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73181665	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73181667	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73181672	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73181677	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73193229	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73193235	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73356099	0.84[EUR][1000 genomes]
rs7778324	0.85[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7810163	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7810482	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7811052	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9886302	0.89[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv519090	chr7:70085934-71071896	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1015261	chr7:70404302-71255933	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:70784000-70808200	Weak transcription	Aorta	Aorta
2	chr7:70787800-70795400	Weak transcription	Ovary	ovary
3	chr7:70790000-70794800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr7:70790200-70794600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr7:70790800-70793400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr7:70790800-70793600	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr7:70790800-70793600	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr7:70790800-70794200	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr7:70790800-70794200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr7:70790800-70795800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr7:70790800-70799200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr7:70790800-70804800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr7:70791000-70794600	Enhancers	Fetal Heart	heart
14	chr7:70792000-70794000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr7:70792200-70793600	Enhancers	Left Ventricle	heart
16	chr7:70792200-70794200	Weak transcription	HSMM	muscle
17	chr7:70792800-70793600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr7:70792800-70793800	Enhancers	H1 Cell Line	embryonic stem cell
19	chr7:70793000-70794400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
20	chr7:70793000-70794600	Enhancers	HUES64 Cell Line	embryonic stem cell
21	chr7:70793000-70794600	Enhancers	iPS-20b Cell Line	embryonic stem cell
22	chr7:70793200-70793400	Enhancers	Fetal Lung	lung
23	chr7:70793200-70793600	Enhancers	Skeletal Muscle Male	skeletal muscle
24	chr7:70793200-70794200	Enhancers	Skeletal Muscle Female	skeletal muscle
25	chr7:70793200-70794800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr7:70793200-70794800	Enhancers	iPS-18 Cell Line	embryonic stem cell
27	chr7:70793200-70795000	Enhancers	Fetal Muscle Leg	muscle

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