Variant report

Variant	rs73181662
Chromosome Location	chr7:70813884-70813885
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10256635	0.87[ASN][1000 genomes]
rs12666910	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12668780	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12673556	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1574440	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2141885	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2527289	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2527291	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2527298	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2527312	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4073529	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4270841	0.80[ASN][1000 genomes]
rs55912227	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73179792	0.87[ASN][1000 genomes]
rs73181636	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73181639	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73181654	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73181665	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73181667	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73181672	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73181677	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73193229	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73193235	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7778324	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7810163	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7810482	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7811052	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv519090	chr7:70085934-71071896	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1015261	chr7:70404302-71255933	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:70812400-70815400	Enhancers	HUES64 Cell Line	embryonic stem cell
2	chr7:70812600-70814200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr7:70812600-70814600	Enhancers	iPS-20b Cell Line	embryonic stem cell
4	chr7:70812600-70814600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
5	chr7:70812600-70814800	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr7:70812800-70814400	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr7:70813200-70814000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr7:70813200-70814400	Enhancers	H1 Cell Line	embryonic stem cell
9	chr7:70813200-70814400	Enhancers	H9 Cell Line	embryonic stem cell
10	chr7:70813200-70814600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
11	chr7:70813200-70814600	Enhancers	iPS-18 Cell Line	embryonic stem cell
12	chr7:70813400-70814600	Enhancers	HUES48 Cell Line	embryonic stem cell
13	chr7:70813400-70814600	Enhancers	iPS-15b Cell Line	embryonic stem cell
14	chr7:70813400-70814800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr7:70813400-70814800	Enhancers	Fetal Muscle Leg	muscle
16	chr7:70813600-70814200	Enhancers	Fetal Lung	lung
17	chr7:70813600-70814400	Enhancers	Placenta Amnion	Placenta Amnion
18	chr7:70813600-70814800	Enhancers	Fetal Brain Female	brain
19	chr7:70813600-70814800	Enhancers	Fetal Stomach	stomach
20	chr7:70813600-70815000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr7:70813800-70814000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
22	chr7:70813800-70814000	Enhancers	Ovary	ovary
23	chr7:70813800-70814000	Enhancers	Pancreas	Pancrea
24	chr7:70813800-70814200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
25	chr7:70813800-70814200	Enhancers	Breast Myoepithelial Primary Cells	Breast
26	chr7:70813800-70814200	Flanking Active TSS	Rectal Smooth Muscle	rectum
27	chr7:70813800-70814600	Active TSS	Colon Smooth Muscle	Colon
28	chr7:70813800-70814600	Flanking Active TSS	Fetal Brain Male	brain
29	chr7:70813800-70814800	Active TSS	Stomach Smooth Muscle	stomach
30	chr7:70813800-70815000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr7:70813800-70815000	Enhancers	Fetal Heart	heart

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