Variant report

Variant	rs55912227
Chromosome Location	chr7:70825747-70825748
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs12155133	0.83[ASN][1000 genomes]
rs12673556	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2107798	0.83[ASN][1000 genomes]
rs2141885	0.91[EUR][1000 genomes]
rs2527289	0.92[EUR][1000 genomes]
rs2527291	0.92[EUR][1000 genomes]
rs2527298	0.91[EUR][1000 genomes]
rs2527312	0.91[EUR][1000 genomes]
rs73181636	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73181639	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73181654	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73181662	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73181665	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73181667	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73181672	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73181677	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73193229	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73193235	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7385083	0.82[ASN][1000 genomes]
rs7778324	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7810163	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7810482	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7811052	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv519090	chr7:70085934-71071896	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1015261	chr7:70404302-71255933	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:70814800-70828400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr7:70814800-70829400	Weak transcription	Ovary	ovary
3	chr7:70815000-70826000	Weak transcription	Fetal Heart	heart
4	chr7:70818800-70828800	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr7:70819000-70828600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr7:70821400-70826600	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr7:70823000-70828600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr7:70825600-70829000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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