Variant report

Variant	rs12666910
Chromosome Location	chr7:70788965-70788966
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:70787528..70789669-chr7:70793598..70795128,2	K562	blood:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10226199	0.81[EUR][1000 genomes]
rs10256635	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12668780	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12669285	0.80[EUR][1000 genomes]
rs12673556	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1574440	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1922527	0.81[EUR][1000 genomes]
rs2141885	0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2527289	0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2527291	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2527298	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2527312	0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3923571	0.80[EUR][1000 genomes]
rs4073529	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4270841	0.81[ASN][1000 genomes]
rs4283926	0.81[ASN][1000 genomes]
rs73179792	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73181636	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73181639	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73181654	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73181662	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73181665	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73181667	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73181672	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73181677	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73193229	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73193235	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73356099	0.83[EUR][1000 genomes]
rs7778324	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7810163	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7810482	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7811052	0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv519090	chr7:70085934-71071896	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1015261	chr7:70404302-71255933	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:70765800-70790000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr7:70773400-70789800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr7:70780800-70789200	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr7:70784000-70808200	Weak transcription	Aorta	Aorta
5	chr7:70785000-70790000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr7:70786000-70790200	Weak transcription	Fetal Muscle Leg	muscle
7	chr7:70787800-70795400	Weak transcription	Ovary	ovary
8	chr7:70788600-70789000	Enhancers	Fetal Lung	lung
9	chr7:70788600-70789200	Enhancers	HSMM	muscle
10	chr7:70788800-70789000	Enhancers	Left Ventricle	heart
11	chr7:70788800-70789200	Enhancers	H9 Cell Line	embryonic stem cell
12	chr7:70788800-70789200	Enhancers	Spleen	Spleen
13	chr7:70788800-70789400	Enhancers	Fetal Heart	heart
14	chr7:70788800-70791000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links