Variant report

Variant	rs12668780
Chromosome Location	chr7:70791760-70791761
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10256635	1.00[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10266560	1.00[CEU][hapmap];0.88[JPT][hapmap]
rs10272997	1.00[CEU][hapmap];0.88[JPT][hapmap]
rs12666910	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12673556	0.93[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1574440	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1922527	1.00[CEU][hapmap];0.88[JPT][hapmap]
rs2141885	0.93[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2527289	0.92[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2527291	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2527297	0.92[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs2527298	0.92[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2527312	0.92[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4073529	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6943983	0.83[CEU][hapmap]
rs6976591	0.85[CEU][hapmap];0.88[JPT][hapmap]
rs73179792	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73181636	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73181639	0.86[AFR][1000 genomes];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73181654	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73181662	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73181665	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73181667	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73181672	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73181677	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73193229	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73193235	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73356099	0.81[EUR][1000 genomes]
rs7778324	0.92[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7810163	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7810482	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7811052	0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9886302	0.85[CEU][hapmap];0.88[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv519090	chr7:70085934-71071896	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1015261	chr7:70404302-71255933	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:70784000-70808200	Weak transcription	Aorta	Aorta
2	chr7:70787800-70795400	Weak transcription	Ovary	ovary
3	chr7:70789000-70793200	Weak transcription	Fetal Lung	lung
4	chr7:70790000-70792000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr7:70790000-70794800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr7:70790200-70794600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr7:70790600-70792200	Enhancers	HSMM	muscle
8	chr7:70790600-70793200	Weak transcription	Fetal Muscle Leg	muscle
9	chr7:70790800-70792200	Weak transcription	Left Ventricle	heart
10	chr7:70790800-70792800	Weak transcription	H1 Cell Line	embryonic stem cell
11	chr7:70790800-70793000	Weak transcription	HUES64 Cell Line	embryonic stem cell
12	chr7:70790800-70793000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
13	chr7:70790800-70793000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr7:70790800-70793400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr7:70790800-70793600	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr7:70790800-70793600	Weak transcription	HUES48 Cell Line	embryonic stem cell
17	chr7:70790800-70794200	Weak transcription	HUES6 Cell Line	embryonic stem cell
18	chr7:70790800-70794200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
19	chr7:70790800-70795800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
20	chr7:70790800-70799200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr7:70790800-70804800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
22	chr7:70791000-70791800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr7:70791000-70793200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
24	chr7:70791000-70794600	Enhancers	Fetal Heart	heart
25	chr7:70791200-70792200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr7:70791400-70793200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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