Variant report

Variant	rs1558003
Chromosome Location	chr7:70746926-70746927
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:61)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr7:70746877-70746927	Hepatocyte	liver:	n/a
2	chr7:70746877-70746927	HIPEpiC	eye:	n/a
3	chr7:70746877-70746927	BE2_C	brain:	n/a
4	chr7:70746877-70746927	NHDF-neo	bronchial:	n/a
5	chr7:70746877-70746927	A549	lung:	n/a
6	chr7:70746877-70746927	MCF10A-Er-Src	breast:	n/a
7	chr7:70746877-70746927	AG04449	skin:	fetal
8	chr7:70746877-70746927	H1-hESC	embryonic stem cell:	embryo
9	chr7:70746877-70746927	HepG2	liver:	n/a
10	chr7:70746877-70746927	HMEC	breast:	n/a
11	chr7:70746877-70746927	SK-N-MC	brain:	n/a
12	chr7:70746877-70746927	HNPCEpiC	eye:	n/a
13	chr7:70746877-70746927	SAEC	small airway:	n/a
14	chr7:70746877-70746927	GM12891	blood:	n/a
15	chr7:70746877-70746927	AG10803	skin:	n/a
16	chr7:70746877-70746927	NH-A	brain:	n/a
17	chr7:70746877-70746927	LNCaP	prostate:	n/a
18	chr7:70746877-70746927	HEEpiC	esophagus:	n/a
19	chr7:70746877-70746927	HRCEpiC	kidney:	n/a
20	chr7:70746877-70746927	PFSK-1	brain:	n/a
21	chr7:70746877-70746927	T-47D	breast:	n/a
22	chr7:70746877-70746927	NB4	blood:	n/a
23	chr7:70746877-70746927	HAEpiC	amniotic membrane:	n/a
24	chr7:70746877-70746927	Hela-S3	cervix:	n/a
25	chr7:70746877-70746927	AoSMC	blood vessel:	n/a
26	chr7:70746877-70746927	PrEC	prostate:	n/a
27	chr7:70746877-70746927	ProgFib	skin:	n/a
28	chr7:70746877-70746927	HL-60	blood:	n/a
29	chr7:70746877-70746927	RPTEC	kidney:	n/a
30	chr7:70746877-70746927	HCF	heart:	n/a
31	chr7:70746877-70746927	Caco-2	colon:	n/a
32	chr7:70746877-70746927	HPAEpiC	pulmonary alveolar:	n/a
33	chr7:70746877-70746927	MCF-7	breast:	n/a
34	chr7:70746877-70746927	AG04450	lung:	fetal
35	chr7:70746877-70746927	GM12892	blood:	n/a
36	chr7:70746877-70746927	PANC-1	pancreas:	n/a
37	chr7:70746877-70746927	HCM	heart:	n/a
38	chr7:70746877-70746927	GM06990	blood:	n/a
39	chr7:70746877-70746927	HUVEC	blood vessel:	n/a
40	chr7:70746877-70746927	CMK	blood:	n/a
41	chr7:70746877-70746927	K562	blood:	n/a
42	chr7:70746877-70746927	ECC-1	luminal epithelium:	n/a
43	chr7:70746877-70746927	SK-N-SH_RA	brain:	n/a
44	chr7:70746877-70746927	AG09319	gingival:	n/a
45	chr7:70746877-70746927	Jurkat	blood:	n/a
46	chr7:70746877-70746927	GM19239	blood:	n/a
47	chr7:70746877-70746927	AG09309	skin:	n/a
48	chr7:70746877-70746927	GM12878	blood:	n/a
49	chr7:70746877-70746927	BJ	skin:	n/a
50	chr7:70746877-70746927	HCPEpiC	choroid plexus:	n/a

No data

Variant related genes	Relation type
WBSCR17	CpG island

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10231965	0.83[ASN][1000 genomes]
rs10261998	0.82[ASN][1000 genomes]
rs10263619	0.80[ASN][1000 genomes]
rs10266560	0.86[JPT][hapmap];0.80[ASN][1000 genomes]
rs10272997	0.86[JPT][hapmap];0.82[ASN][1000 genomes]
rs1202639	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12155368	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1465231	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1922527	0.86[JPT][hapmap]
rs28670821	0.82[ASN][1000 genomes]
rs2867411	0.80[ASN][1000 genomes]
rs4270841	0.82[JPT][hapmap]
rs4446620	0.96[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4612224	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4717590	0.96[EUR][1000 genomes]
rs4719110	0.81[JPT][hapmap]
rs6460650	0.81[JPT][hapmap]
rs67615560	0.82[ASN][1000 genomes]
rs6942815	0.84[ASN][1000 genomes]
rs6943983	0.84[YRI][hapmap];0.82[ASN][1000 genomes]
rs6944999	0.81[JPT][hapmap]
rs6961808	0.82[ASN][1000 genomes]
rs6976562	0.84[ASN][1000 genomes]
rs6976574	0.84[ASN][1000 genomes]
rs6976591	0.86[JPT][hapmap];0.84[ASN][1000 genomes]
rs73177835	0.84[ASN][1000 genomes]
rs7792223	0.87[ASN][1000 genomes]
rs9690269	0.96[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9886302	0.82[CHB][hapmap];0.86[JPT][hapmap];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv519090	chr7:70085934-71071896	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1015261	chr7:70404302-71255933	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1033155	chr7:70712368-70757929	Enhancers Weak transcription ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:70732400-70755400	Weak transcription	Right Atrium	heart
2	chr7:70733200-70747000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr7:70735200-70747000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr7:70736400-70747200	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr7:70739800-70750600	Weak transcription	Fetal Muscle Leg	muscle
6	chr7:70740000-70751600	Weak transcription	Left Ventricle	heart
7	chr7:70741200-70750600	Weak transcription	Ovary	ovary
8	chr7:70742600-70747000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr7:70743600-70750200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr7:70744000-70747000	Weak transcription	HUES6 Cell Line	embryonic stem cell
11	chr7:70745400-70750600	Weak transcription	Pancreas	Pancrea
12	chr7:70745800-70747000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr7:70745800-70755000	Weak transcription	Fetal Heart	heart
14	chr7:70746000-70747000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr7:70746000-70747400	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr7:70746200-70747400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr7:70746800-70748600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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