Variant report

Variant	rs9690269
Chromosome Location	chr7:70757432-70757433
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10226199	0.83[ASN][1000 genomes]
rs10231965	0.83[ASN][1000 genomes]
rs10261998	0.85[ASN][1000 genomes]
rs10263619	0.83[ASN][1000 genomes]
rs10266560	0.83[ASN][1000 genomes]
rs10272997	0.85[ASN][1000 genomes]
rs11976781	0.88[ASN][1000 genomes]
rs1202639	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12155368	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.86[YRI][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12669285	0.83[ASN][1000 genomes]
rs1465231	0.96[CEU][hapmap];0.90[CHB][hapmap];0.94[JPT][hapmap];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1558003	0.96[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1922527	0.83[ASN][1000 genomes]
rs28631036	0.81[ASN][1000 genomes]
rs28670821	0.86[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs2867411	0.83[ASN][1000 genomes]
rs3923571	0.83[ASN][1000 genomes]
rs4446620	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4612224	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4717590	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs67615560	0.85[ASN][1000 genomes]
rs6942815	0.84[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs6943983	0.86[ASN][1000 genomes]
rs6961808	0.86[ASN][1000 genomes]
rs6976562	0.87[ASN][1000 genomes]
rs6976574	0.87[ASN][1000 genomes]
rs6976591	0.80[JPT][hapmap];1.00[YRI][hapmap];0.87[ASN][1000 genomes]
rs73177835	0.87[ASN][1000 genomes]
rs7792223	0.81[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs9886302	0.85[YRI][hapmap];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv519090	chr7:70085934-71071896	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1015261	chr7:70404302-71255933	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1033155	chr7:70712368-70757929	Enhancers Weak transcription ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:70751200-70768200	Weak transcription	HUES64 Cell Line	embryonic stem cell
2	chr7:70751800-70768600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr7:70751800-70768800	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr7:70752200-70773000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr7:70753800-70760200	Weak transcription	Ovary	ovary
6	chr7:70755800-70763800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr7:70756000-70762800	Weak transcription	Colon Smooth Muscle	Colon
8	chr7:70756000-70764000	Weak transcription	Fetal Muscle Leg	muscle
9	chr7:70756000-70765000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr7:70756000-70765200	Weak transcription	Fetal Heart	heart
11	chr7:70757200-70758000	Enhancers	iPS-18 Cell Line	embryonic stem cell
12	chr7:70757200-70758800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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