Variant report

Variant	rs12155368
Chromosome Location	chr7:70747744-70747745
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10226199	0.81[ASN][1000 genomes]
rs10231965	0.81[ASN][1000 genomes]
rs10261998	0.83[ASN][1000 genomes]
rs10263619	0.82[ASN][1000 genomes]
rs10266560	0.86[JPT][hapmap];0.82[ASN][1000 genomes]
rs10272997	0.86[JPT][hapmap];0.83[ASN][1000 genomes]
rs11976781	0.81[ASN][1000 genomes]
rs1202639	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12669285	0.81[ASN][1000 genomes]
rs1465231	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1558003	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1922527	0.86[JPT][hapmap];0.81[ASN][1000 genomes]
rs28670821	0.84[ASN][1000 genomes]
rs2867411	0.82[ASN][1000 genomes]
rs3923571	0.81[ASN][1000 genomes]
rs4270841	0.81[CEU][hapmap];0.82[JPT][hapmap]
rs4446620	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4612224	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4717590	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4719110	0.81[JPT][hapmap]
rs6460650	0.81[JPT][hapmap]
rs67615560	0.83[ASN][1000 genomes]
rs6942815	0.85[ASN][1000 genomes]
rs6943983	0.84[ASN][1000 genomes]
rs6944999	0.81[JPT][hapmap]
rs6961808	0.84[ASN][1000 genomes]
rs6976562	0.85[ASN][1000 genomes]
rs6976574	0.85[ASN][1000 genomes]
rs6976591	0.86[JPT][hapmap];0.80[YRI][hapmap];0.85[ASN][1000 genomes]
rs73177835	0.85[ASN][1000 genomes]
rs7792223	0.89[ASN][1000 genomes]
rs9690269	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.86[YRI][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9886302	0.86[JPT][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv519090	chr7:70085934-71071896	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1015261	chr7:70404302-71255933	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1033155	chr7:70712368-70757929	Enhancers Weak transcription ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:70732400-70755400	Weak transcription	Right Atrium	heart
2	chr7:70739800-70750600	Weak transcription	Fetal Muscle Leg	muscle
3	chr7:70740000-70751600	Weak transcription	Left Ventricle	heart
4	chr7:70741200-70750600	Weak transcription	Ovary	ovary
5	chr7:70743600-70750200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr7:70745400-70750600	Weak transcription	Pancreas	Pancrea
7	chr7:70745800-70755000	Weak transcription	Fetal Heart	heart
8	chr7:70746800-70748600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr7:70747000-70747800	Enhancers	iPS-15b Cell Line	embryonic stem cell
10	chr7:70747000-70748000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr7:70747200-70748000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr7:70747400-70748000	Enhancers	H9 Cell Line	embryonic stem cell
13	chr7:70747400-70748000	Enhancers	iPS-18 Cell Line	embryonic stem cell
14	chr7:70747400-70748000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr7:70747400-70750600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr7:70747600-70749800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr7:70747600-70750000	Weak transcription	HUES6 Cell Line	embryonic stem cell
18	chr7:70747600-70750000	Weak transcription	HUES64 Cell Line	embryonic stem cell
19	chr7:70747600-70750200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
20	chr7:70747600-70750400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
21	chr7:70747600-70751000	Weak transcription	H1 Cell Line	embryonic stem cell

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