Variant report

Variant	rs2707433
Chromosome Location	chr7:70818872-70818873
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10267677	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11760742	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11768233	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11770205	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11771662	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13240200	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1544441	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs1544443	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs17628870	0.91[CEU][hapmap];0.82[CHB][hapmap];0.83[EUR][1000 genomes]
rs2107795	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2527286	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2527300	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2527313	0.82[CHB][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2707425	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2707438	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34445434	0.80[EUR][1000 genomes]
rs34822312	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35964468	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4717591	0.87[CEU][hapmap];1.00[CHB][hapmap]
rs4719115	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6952259	0.84[ASN][1000 genomes]
rs6972973	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6974603	1.00[CHB][hapmap]
rs7792469	1.00[JPT][hapmap]
rs7803720	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv519090	chr7:70085934-71071896	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1015261	chr7:70404302-71255933	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:70814800-70821800	Weak transcription	Pancreas	Pancrea
2	chr7:70814800-70828400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr7:70814800-70829400	Weak transcription	Ovary	ovary
4	chr7:70815000-70826000	Weak transcription	Fetal Heart	heart
5	chr7:70815600-70819400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr7:70817800-70819200	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
7	chr7:70818400-70819000	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
8	chr7:70818800-70828800	Weak transcription	HUES64 Cell Line	embryonic stem cell

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