Variant report

Variant	rs35964468
Chromosome Location	chr7:70798495-70798496
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10267677	0.81[EUR][1000 genomes]
rs11760742	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11768233	0.85[EUR][1000 genomes]
rs11770205	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11771662	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs13240200	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17628870	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2107795	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2527313	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2707425	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2707433	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2707438	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs34445434	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34822312	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4717591	0.85[AMR][1000 genomes]
rs4719115	0.80[EUR][1000 genomes]
rs6972973	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7787083	0.83[ASN][1000 genomes]
rs7790268	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv519090	chr7:70085934-71071896	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1015261	chr7:70404302-71255933	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:70784000-70808200	Weak transcription	Aorta	Aorta
2	chr7:70790800-70799200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr7:70790800-70804800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr7:70793600-70802200	Weak transcription	Left Ventricle	heart
5	chr7:70794000-70800600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr7:70794400-70799000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr7:70794400-70801400	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr7:70794400-70801400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr7:70794600-70799400	Weak transcription	Fetal Lung	lung
10	chr7:70794600-70800600	Weak transcription	HUES64 Cell Line	embryonic stem cell
11	chr7:70794600-70800800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
12	chr7:70794600-70801400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr7:70794600-70801400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr7:70794600-70801400	Weak transcription	HUES48 Cell Line	embryonic stem cell
15	chr7:70794600-70806600	Weak transcription	HUES6 Cell Line	embryonic stem cell
16	chr7:70794800-70801200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr7:70794800-70804800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
18	chr7:70796000-70798600	Weak transcription	Fetal Muscle Leg	muscle
19	chr7:70796000-70798800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
20	chr7:70796000-70804200	Weak transcription	Ovary	ovary

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