Variant report

Variant	rs11767632
Chromosome Location	chr7:39656686-39656687
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11769865	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.89[YRI][hapmap];0.82[EUR][1000 genomes]
rs11982634	1.00[CEU][hapmap];0.95[CHB][hapmap];0.85[JPT][hapmap];0.89[YRI][hapmap];0.81[EUR][1000 genomes]
rs2008819	0.82[CHB][hapmap]
rs2107710	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap]
rs2158549	0.95[CEU][hapmap]
rs2329464	0.96[CEU][hapmap]
rs2876862	0.95[CEU][hapmap]
rs4723887	1.00[CEU][hapmap]
rs4723892	0.95[CEU][hapmap]
rs6462936	0.80[EUR][1000 genomes]
rs6462937	0.91[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap]
rs6952363	0.96[CEU][hapmap];0.87[CHB][hapmap]
rs6956681	0.95[CEU][hapmap]
rs6969523	0.96[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap]
rs7806651	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv887970	chr7:39587912-39688152	Bivalent Enhancer Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11767632	LINC00265	cis	Esophagus Mucosa	GTEx

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:39645200-39661600	Weak transcription	A549	lung
2	chr7:39651800-39657000	Enhancers	HUVEC	blood vessel
3	chr7:39652400-39656800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr7:39654800-39657200	Enhancers	Muscle Satellite Cultured Cells	--
5	chr7:39655000-39657000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr7:39655000-39657000	Enhancers	Hela-S3	cervix
7	chr7:39655000-39657000	Enhancers	NHDF-Ad	bronchial
8	chr7:39655000-39657000	Enhancers	Osteobl	bone
9	chr7:39655200-39657000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr7:39655200-39661800	Weak transcription	Pancreas	Pancrea
11	chr7:39655400-39657000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr7:39655400-39657000	Enhancers	HMEC	breast
13	chr7:39655600-39660400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr7:39655800-39661000	Weak transcription	K562	blood
15	chr7:39656000-39659400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr7:39656200-39657800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr7:39656200-39659800	Weak transcription	HSMMtube	muscle
18	chr7:39656200-39660600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr7:39656600-39657000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr7:39656600-39659200	Weak transcription	NHLF	lung
21	chr7:39656600-39659400	Weak transcription	HSMM	muscle
22	chr7:39656600-39659400	Weak transcription	NHEK	skin
23	chr7:39656600-39659600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr7:39656600-39660400	Weak transcription	NH-A	brain
25	chr7:39656600-39661000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr7:39656600-39661400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr7:39656600-39661800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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