Variant report
| Variant | rs11768389 |
|---|---|
| Chromosome Location | chr7:127150250-127150251 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:3)
- LncRNA region (count:1)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:3 , 50 per page) page:
1
(count:1 , 50 per page) page:
1
| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-ARF5-9 | chr7:127150225-127150472 | expReg_chr7_8819_+ |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:7)
| rs_ID | r2[population] |
|---|---|
| rs10954158 | 0.82[CEU][hapmap] |
| rs12666432 | 0.82[CEU][hapmap] |
| rs12673058 | 0.81[CEU][hapmap] |
| rs1419410 | 0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs4731365 | 0.81[CEU][hapmap] |
| rs55791028 | 0.84[EUR][1000 genomes] |
| rs62481355 | 0.84[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv831122 | chr7:127143207-127357885 | Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 20 gene(s) | inside rSNPs | diseases |
mRNA abundance (count:2)
| SNP | Gene | Cis/trans | Tissue | Source |
|---|---|---|---|---|
| rs11768389 | ASB15 | cis | cerebellum | SCAN |
| rs11768389 | KCP | cis | cerebellum | SCAN |
Chromatin state (count:0 , 50 per page) page:
| No data |
