Variant report

Variant	rs11768555
Chromosome Location	chr7:152557303-152557304
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:152556277..152558031-chr7:152558096..152559676,2	MCF-7	breast:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs4726215	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs940262	0.86[AFR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9986710	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033496	chr7:152125903-152615617	Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
2	nsv539208	chr7:152125903-152615617	Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
3	nsv1027100	chr7:152294734-152935140	Flanking Bivalent TSS/Enh Enhancers ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
4	nsv831193	chr7:152353544-152592678	Strong transcription Active TSS Genic enhancers Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
5	nsv532221	chr7:152371297-152884547	Weak transcription Strong transcription Flanking Bivalent TSS/Enh Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
6	nsv868873	chr7:152371297-152900113	Weak transcription Enhancers Bivalent/Poised TSS Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
7	nsv532222	chr7:152504090-153450290	Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
8	nsv889506	chr7:152521953-152631037	Flanking Bivalent TSS/Enh Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	nsv1019335	chr7:152546243-152676615	Bivalent Enhancer Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
10	nsv539209	chr7:152546243-152676615	Weak transcription Enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:73 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:152489800-152568800	Weak transcription	Hela-S3	cervix
2	chr7:152498400-152559200	Weak transcription	Monocytes-CD14+_RO01746	blood
3	chr7:152510200-152569800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr7:152518000-152558800	Weak transcription	Dnd41	blood
5	chr7:152527600-152564800	Weak transcription	A549	lung
6	chr7:152534800-152557800	Weak transcription	Primary T helper cells PMA-I stimulated	--
7	chr7:152538400-152559200	Weak transcription	Primary hematopoietic stem cells	blood
8	chr7:152539200-152563800	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr7:152540600-152560600	Weak transcription	HepG2	liver
10	chr7:152541000-152563800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr7:152541000-152568400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr7:152541200-152559200	Weak transcription	Primary neutrophils fromperipheralblood	blood
13	chr7:152544600-152561600	Weak transcription	Fetal Kidney	kidney
14	chr7:152547200-152563600	Weak transcription	Brain Anterior Caudate	brain
15	chr7:152548200-152562600	Weak transcription	Colon Smooth Muscle	Colon
16	chr7:152548400-152564600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr7:152550000-152566600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr7:152550400-152557600	Weak transcription	Muscle Satellite Cultured Cells	--
19	chr7:152550800-152560600	Weak transcription	Fetal Intestine Large	intestine
20	chr7:152550800-152563600	Weak transcription	Thymus	Thymus
21	chr7:152551800-152557600	Weak transcription	Brain Substantia Nigra	brain
22	chr7:152551800-152560800	Weak transcription	Brain Cingulate Gyrus	brain
23	chr7:152551800-152564000	Weak transcription	Fetal Intestine Small	intestine
24	chr7:152551800-152566600	Weak transcription	Cortex derived primary cultured neurospheres	brain
25	chr7:152552000-152559200	Weak transcription	Placenta	Placenta
26	chr7:152552000-152562000	Weak transcription	Rectal Mucosa Donor 31	rectum
27	chr7:152552000-152562200	Weak transcription	Pancreas	Pancrea
28	chr7:152552000-152562400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
29	chr7:152552000-152562600	Weak transcription	Aorta	Aorta
30	chr7:152552000-152564000	Weak transcription	Ovary	ovary
31	chr7:152552000-152564400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
32	chr7:152552000-152565600	Weak transcription	Fetal Muscle Leg	muscle
33	chr7:152552000-152566400	Weak transcription	H1 Cell Line	embryonic stem cell
34	chr7:152552000-152566400	Weak transcription	Fetal Brain Female	brain
35	chr7:152552200-152565800	Weak transcription	HSMMtube	muscle
36	chr7:152552600-152562800	Weak transcription	Primary T helper cells fromperipheralblood	blood
37	chr7:152552600-152564200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
38	chr7:152553600-152564200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
39	chr7:152553600-152564200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
40	chr7:152553600-152567000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
41	chr7:152553800-152557600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
42	chr7:152553800-152558800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
43	chr7:152553800-152558800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
44	chr7:152553800-152558800	Weak transcription	Lung	lung
45	chr7:152553800-152558800	Weak transcription	Skeletal Muscle Male	skeletal muscle
46	chr7:152553800-152558800	Weak transcription	Spleen	Spleen
47	chr7:152553800-152559200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
48	chr7:152553800-152559200	Weak transcription	Primary monocytes fromperipheralblood	blood
49	chr7:152553800-152560200	Weak transcription	Brain Hippocampus Middle	brain
50	chr7:152553800-152560800	Weak transcription	Adipose Nuclei	Adipose

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