Variant report

Variant	rs4726215
Chromosome Location	chr7:152550499-152550500
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:152549163..152550690-chr7:152554091..152556185,2	MCF-7	breast:
2	chr7:152549705..152553175-chr7:152560655..152563362,3	K562	blood:
3	chr7:152550006..152552312-chr7:152554663..152556765,3	K562	blood:

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10276445	0.84[MEX][hapmap];0.83[AMR][1000 genomes]
rs11768555	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13238406	0.84[MEX][hapmap]
rs3864523	0.81[CEU][hapmap]
rs940262	0.91[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.88[TSI][hapmap];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9986710	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033496	chr7:152125903-152615617	Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
2	nsv539208	chr7:152125903-152615617	Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
3	nsv1027100	chr7:152294734-152935140	Flanking Bivalent TSS/Enh Enhancers ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
4	nsv831193	chr7:152353544-152592678	Strong transcription Active TSS Genic enhancers Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
5	nsv532221	chr7:152371297-152884547	Weak transcription Strong transcription Flanking Bivalent TSS/Enh Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
6	nsv868873	chr7:152371297-152900113	Weak transcription Enhancers Bivalent/Poised TSS Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
7	nsv532222	chr7:152504090-153450290	Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
8	nsv889506	chr7:152521953-152631037	Flanking Bivalent TSS/Enh Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	nsv1019335	chr7:152546243-152676615	Bivalent Enhancer Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
10	nsv539209	chr7:152546243-152676615	Weak transcription Enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:108 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:152489800-152568800	Weak transcription	Hela-S3	cervix
2	chr7:152498400-152556000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr7:152498400-152559200	Weak transcription	Monocytes-CD14+_RO01746	blood
4	chr7:152500600-152556000	Weak transcription	Primary T cells fromperipheralblood	blood
5	chr7:152504000-152555000	Weak transcription	K562	blood
6	chr7:152509200-152551200	Weak transcription	Fetal Muscle Leg	muscle
7	chr7:152510200-152569800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr7:152514400-152554800	Weak transcription	Osteobl	bone
9	chr7:152514800-152555000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr7:152518000-152558800	Weak transcription	Dnd41	blood
11	chr7:152518600-152551400	Weak transcription	HSMMtube	muscle
12	chr7:152527600-152564800	Weak transcription	A549	lung
13	chr7:152528600-152551400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr7:152530600-152554800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr7:152534800-152554600	Weak transcription	Fetal Thymus	thymus
16	chr7:152534800-152557800	Weak transcription	Primary T helper cells PMA-I stimulated	--
17	chr7:152536800-152553400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
18	chr7:152538200-152556600	Weak transcription	Primary B cells from cord blood	blood
19	chr7:152538400-152559200	Weak transcription	Primary hematopoietic stem cells	blood
20	chr7:152538600-152551400	Weak transcription	Rectal Mucosa Donor 29	rectum
21	chr7:152539200-152563800	Weak transcription	Sigmoid Colon	Sigmoid Colon
22	chr7:152539800-152551400	Weak transcription	Fetal Muscle Trunk	muscle
23	chr7:152540000-152550600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
24	chr7:152540200-152551000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr7:152540600-152560600	Weak transcription	HepG2	liver
26	chr7:152540800-152555200	Weak transcription	GM12878-XiMat	blood
27	chr7:152541000-152551000	Weak transcription	Stomach Smooth Muscle	stomach
28	chr7:152541000-152563800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr7:152541000-152568400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr7:152541200-152550600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
31	chr7:152541200-152551000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr7:152541200-152559200	Weak transcription	Primary neutrophils fromperipheralblood	blood
33	chr7:152542400-152553400	Weak transcription	HSMM	muscle
34	chr7:152542800-152551400	Weak transcription	Rectal Mucosa Donor 31	rectum
35	chr7:152544600-152551200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
36	chr7:152544600-152561600	Weak transcription	Fetal Kidney	kidney
37	chr7:152545200-152551600	Weak transcription	Duodenum Smooth Muscle	Duodenum
38	chr7:152545200-152553400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
39	chr7:152545600-152556600	Strong transcription	Primary T cells from cord blood	blood
40	chr7:152546600-152551400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
41	chr7:152546600-152555400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
42	chr7:152546800-152553800	Strong transcription	HUES48 Cell Line	embryonic stem cell
43	chr7:152547000-152552000	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
44	chr7:152547200-152551200	Weak transcription	Primary monocytes fromperipheralblood	blood
45	chr7:152547200-152563600	Weak transcription	Brain Anterior Caudate	brain
46	chr7:152547600-152555400	Weak transcription	Small Intestine	intestine
47	chr7:152547800-152553200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
48	chr7:152547800-152555200	Weak transcription	Rectal Smooth Muscle	rectum
49	chr7:152548000-152551200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
50	chr7:152548000-152551400	Weak transcription	Brain Hippocampus Middle	brain

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