Variant report

Variant	rs11768558
Chromosome Location	chr7:107513581-107513582
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs34405835	1.00[AFR][1000 genomes]
rs35417737	1.00[ASN][1000 genomes]
rs35433985	1.00[ASN][1000 genomes]
rs71566742	1.00[ASN][1000 genomes]
rs73195573	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033979	chr7:107003734-107877761	Strong transcription Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	62 gene(s)	inside rSNPs	diseases
2	nsv1025008	chr7:107333739-107534235	Enhancers Active TSS Strong transcription Genic enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
3	esv3348839	chr7:107377311-108286538	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	91 gene(s)	inside rSNPs	diseases
4	nsv949344	chr7:107396502-107987085	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
5	nsv831088	chr7:107497100-107693680	Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:107507600-107514400	Weak transcription	Fetal Intestine Small	intestine
2	chr7:107509200-107514600	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr7:107511600-107514400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr7:107511600-107515000	Weak transcription	Primary T cells from cord blood	blood
5	chr7:107511600-107519600	Weak transcription	Primary T cells fromperipheralblood	blood
6	chr7:107511800-107514200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
7	chr7:107511800-107516000	Weak transcription	Fetal Thymus	thymus
8	chr7:107512000-107514600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
9	chr7:107512000-107515400	Weak transcription	Primary T helper cells PMA-I stimulated	--
10	chr7:107512200-107515200	Weak transcription	Primary T helper cells fromperipheralblood	blood
11	chr7:107512200-107515400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
12	chr7:107512400-107515000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
13	chr7:107512600-107514800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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