Variant report

Variant	rs35433985
Chromosome Location	chr7:107443943-107443944
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:61)
Chromatin interactive
region (count:1)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr7:107443898-107443948	Caco-2	colon:	n/a
2	chr7:107443898-107443948	SK-N-SH_RA	brain:	n/a
3	chr7:107443898-107443948	RPTEC	kidney:	n/a
4	chr7:107443898-107443948	BE2_C	brain:	n/a
5	chr7:107443898-107443948	SK-N-MC	brain:	n/a
6	chr7:107443898-107443948	NHBE	bronchial:	n/a
7	chr7:107443898-107443948	HRPEpiC	eye:	n/a
8	chr7:107443898-107443948	A549	lung:	n/a
9	chr7:107443898-107443948	HL-60	blood:	n/a
10	chr7:107443898-107443948	GM19239	blood:	n/a
11	chr7:107443898-107443948	LNCaP	prostate:	n/a
12	chr7:107443898-107443948	BJ	skin:	n/a
13	chr7:107443898-107443948	SK-N-SH	brain:	n/a
14	chr7:107443898-107443948	HAEpiC	amniotic membrane:	n/a
15	chr7:107443898-107443948	U87	brain:	n/a
16	chr7:107443898-107443948	HRE	kidney:	n/a
17	chr7:107443898-107443948	ProgFib	skin:	n/a
18	chr7:107443898-107443948	HCPEpiC	choroid plexus:	n/a
19	chr7:107443898-107443948	T-47D	breast:	n/a
20	chr7:107443898-107443948	PFSK-1	brain:	n/a
21	chr7:107443898-107443948	Hela-S3	cervix:	n/a
22	chr7:107443898-107443948	MCF10A-Er-Src	breast:	n/a
23	chr7:107443898-107443948	HRCEpiC	kidney:	n/a
24	chr7:107443898-107443948	H1-hESC	embryonic stem cell:	embryo
25	chr7:107443898-107443948	GM12891	blood:	n/a
26	chr7:107443898-107443948	GM06990	blood:	n/a
27	chr7:107443898-107443948	GM12878	blood:	n/a
28	chr7:107443898-107443948	HCM	heart:	n/a
29	chr7:107443898-107443948	HEK293	kidney:	embryo
30	chr7:107443898-107443948	SAEC	small airway:	n/a
31	chr7:107443898-107443948	HCT-116	colon:	n/a
32	chr7:107443898-107443948	HepG2	liver:	n/a
33	chr7:107443898-107443948	Hepatocyte	liver:	n/a
34	chr7:107443898-107443948	AG09319	gingival:	n/a
35	chr7:107443898-107443948	Jurkat	blood:	n/a
36	chr7:107443898-107443948	HUVEC	blood vessel:	n/a
37	chr7:107443898-107443948	PrEC	prostate:	n/a
38	chr7:107443898-107443948	HIPEpiC	eye:	n/a
39	chr7:107443898-107443948	K562	blood:	n/a
40	chr7:107443898-107443948	NH-A	brain:	n/a
41	chr7:107443898-107443948	ECC-1	luminal epithelium:	n/a
42	chr7:107443898-107443948	PANC-1	pancreas:	n/a
43	chr7:107443898-107443948	HEEpiC	esophagus:	n/a
44	chr7:107443898-107443948	NHDF-neo	bronchial:	n/a
45	chr7:107443898-107443948	HCF	heart:	n/a
46	chr7:107443898-107443948	ovcar-3	ovarian:	n/a
47	chr7:107443898-107443948	AG04450	lung:	fetal
48	chr7:107443898-107443948	SKMC	muscle:	n/a
49	chr7:107443898-107443948	AoSMC	blood vessel:	n/a
50	chr7:107443898-107443948	CMK	blood:	n/a

(count:1 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:107383809..107386179-chr7:107440671..107445255,4	K562	blood:

No data

Variant related genes	Relation type
SLC26A3	CpG island
ENSG00000105879	Chromatin interaction
ENSG00000241764	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs11768558	1.00[ASN][1000 genomes]
rs35417737	1.00[ASN][1000 genomes]
rs71566742	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033979	chr7:107003734-107877761	Strong transcription Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	62 gene(s)	inside rSNPs	diseases
2	nsv1025008	chr7:107333739-107534235	Enhancers Active TSS Strong transcription Genic enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
3	esv3348839	chr7:107377311-108286538	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	91 gene(s)	inside rSNPs	diseases
4	nsv949344	chr7:107396502-107987085	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:107438600-107444200	Active TSS	Rectal Mucosa Donor 29	rectum
2	chr7:107443600-107444000	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr7:107443800-107445800	Enhancers	Fetal Intestine Small	intestine
4	chr7:107443800-107446000	Enhancers	Fetal Intestine Large	intestine
5	chr7:107443800-107446400	Enhancers	Duodenum Mucosa	Duodenum

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