Variant report

Variant	rs11770163
Chromosome Location	chr7:116417848-116417849
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:116409460..116411211-chr7:116417307..116419044,2	K562	blood:
2	7:115847372-115857098..7:116416142-116418394	H1-hESC	embryonic stem cell:	embryo
3	chr7:116417818..116419444-chr7:116419827..116422346,2	MCF-7	breast:
4	7:115861595-115870968..7:116416142-116418394	H1-hESC	embryonic stem cell:	embryo
5	7:115890993-115892266..7:116416142-116418394	GM12878	blood:

Variant related genes	Relation type
ENSG00000105976	Chromatin interaction
ENSG00000135269	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10215153	0.81[JPT][hapmap];0.83[YRI][hapmap];0.87[ASN][1000 genomes]
rs1621	1.00[JPT][hapmap];0.96[YRI][hapmap];0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs193686	0.90[JPT][hapmap];0.83[YRI][hapmap];0.87[ASN][1000 genomes]
rs41741	1.00[JPT][hapmap];0.96[YRI][hapmap];0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs41789	0.81[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831107	chr7:116414734-116649466	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs11770163	MET	cis	Artery Aorta	GTEx
rs11770163	MET	cis	inferior olivary nucleus	BrainEAC
rs11770163	MET	cis	intralobular white matter	BrainEAC

Chromatin state (count:62 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:116375000-116418400	Weak transcription	Skeletal Muscle Male	skeletal muscle
2	chr7:116378800-116422200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr7:116381600-116418600	Weak transcription	Aorta	Aorta
4	chr7:116393000-116419000	Weak transcription	Left Ventricle	heart
5	chr7:116404000-116420400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr7:116406400-116421000	Weak transcription	Lung	lung
7	chr7:116407200-116419400	Weak transcription	Gastric	stomach
8	chr7:116408600-116419000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr7:116410000-116422200	Weak transcription	Adipose Nuclei	Adipose
10	chr7:116410200-116420400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr7:116411000-116418000	Weak transcription	Placenta	Placenta
12	chr7:116411400-116418200	Weak transcription	Psoas Muscle	Psoas
13	chr7:116413400-116420000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr7:116413400-116424000	Weak transcription	Colonic Mucosa	Colon
15	chr7:116413600-116419200	Weak transcription	Rectal Mucosa Donor 29	rectum
16	chr7:116413800-116418200	Weak transcription	Fetal Muscle Trunk	muscle
17	chr7:116415200-116418600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr7:116415200-116421200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr7:116415400-116418200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr7:116415800-116418200	Weak transcription	Fetal Muscle Leg	muscle
21	chr7:116415800-116418600	Enhancers	Osteobl	bone
22	chr7:116415800-116419000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr7:116415800-116424000	Enhancers	Fetal Lung	lung
24	chr7:116416000-116418200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr7:116416000-116419000	Enhancers	NH-A	brain
26	chr7:116416000-116420000	Weak transcription	Placenta Amnion	Placenta Amnion
27	chr7:116416000-116421000	Enhancers	NHDF-Ad	bronchial
28	chr7:116416200-116418200	Enhancers	HMEC	breast
29	chr7:116416200-116418200	Enhancers	HUVEC	blood vessel
30	chr7:116416200-116418600	Enhancers	NHLF	lung
31	chr7:116416200-116418800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr7:116416200-116419200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr7:116416200-116421400	Enhancers	Duodenum Mucosa	Duodenum
34	chr7:116416200-116421400	Genic enhancers	HSMM	muscle
35	chr7:116416200-116421600	Genic enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
36	chr7:116416200-116421800	Enhancers	Fetal Intestine Large	intestine
37	chr7:116416400-116418200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
38	chr7:116416400-116418200	Weak transcription	Sigmoid Colon	Sigmoid Colon
39	chr7:116416400-116418600	Enhancers	Hela-S3	cervix
40	chr7:116416400-116418800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
41	chr7:116416400-116419600	Weak transcription	Small Intestine	intestine
42	chr7:116416600-116418000	Weak transcription	HepG2	liver
43	chr7:116416600-116418200	Enhancers	Muscle Satellite Cultured Cells	--
44	chr7:116416800-116418200	Weak transcription	Liver	Liver
45	chr7:116416800-116418600	Weak transcription	Pancreas	Pancrea
46	chr7:116416800-116422400	Enhancers	Stomach Mucosa	stomach
47	chr7:116416800-116422600	Weak transcription	H9 Cell Line	embryonic stem cell
48	chr7:116417000-116418600	Weak transcription	Fetal Stomach	stomach
49	chr7:116417000-116420000	Weak transcription	Brain Hippocampus Middle	brain
50	chr7:116417000-116422200	Weak transcription	Brain Substantia Nigra	brain

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