Variant report

Variant	rs10215153
Chromosome Location	chr7:116399131-116399132
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	7:115847372-115857098..7:116398685-116399246	H1-hESC	embryonic stem cell:	embryo

Variant related genes	Relation type
ENSG00000135269	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11770163	0.81[JPT][hapmap];0.83[YRI][hapmap];0.87[ASN][1000 genomes]
rs1356	0.89[YRI][hapmap]
rs1621	0.82[ASW][hapmap];0.85[CHB][hapmap];0.81[JPT][hapmap];0.80[YRI][hapmap];0.85[ASN][1000 genomes]
rs193686	1.00[ASW][hapmap];1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[CHD][hapmap];0.89[GIH][hapmap];0.90[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.92[TSI][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs38857	0.85[CHB][hapmap];0.90[JPT][hapmap]
rs41741	0.82[ASW][hapmap];0.85[CHB][hapmap];0.81[JPT][hapmap];0.80[YRI][hapmap];0.85[ASN][1000 genomes]
rs41750	0.80[YRI][hapmap]
rs41776	0.89[YRI][hapmap]
rs41778	0.93[YRI][hapmap]
rs41786	0.93[YRI][hapmap]
rs41791	0.93[YRI][hapmap]
rs41793	0.93[YRI][hapmap]
rs7803820	0.84[CEU][hapmap]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs10215153	MET	cis	Artery Aorta	GTEx
rs10215153	KCND2	cis	parietal	SCAN

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:116351800-116407000	Weak transcription	Duodenum Mucosa	Duodenum
2	chr7:116357400-116409800	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr7:116375000-116418400	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr7:116375800-116411200	Weak transcription	Rectal Mucosa Donor 29	rectum
5	chr7:116378800-116422200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr7:116381400-116413400	Weak transcription	NHLF	lung
7	chr7:116381600-116418600	Weak transcription	Aorta	Aorta
8	chr7:116381800-116407000	Weak transcription	Pancreas	Pancrea
9	chr7:116382000-116413400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr7:116382200-116409800	Weak transcription	Placenta	Placenta
11	chr7:116383800-116399400	Weak transcription	Fetal Muscle Trunk	muscle
12	chr7:116383800-116409400	Weak transcription	Fetal Kidney	kidney
13	chr7:116384000-116405400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr7:116384000-116406200	Weak transcription	HepG2	liver
15	chr7:116384200-116411200	Weak transcription	Rectal Mucosa Donor 31	rectum
16	chr7:116388400-116416200	Weak transcription	Fetal Stomach	stomach
17	chr7:116391600-116405400	Strong transcription	A549	lung
18	chr7:116391600-116410600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr7:116392600-116405400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr7:116392800-116411600	Weak transcription	NHDF-Ad	bronchial
21	chr7:116393000-116403600	Weak transcription	Brain Inferior Temporal Lobe	brain
22	chr7:116393000-116405400	Weak transcription	Fetal Muscle Leg	muscle
23	chr7:116393000-116419000	Weak transcription	Left Ventricle	heart
24	chr7:116393200-116410600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr7:116393400-116409600	Weak transcription	HSMMtube	muscle
26	chr7:116394000-116411000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr7:116394000-116415600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
28	chr7:116394200-116399800	Weak transcription	Small Intestine	intestine
29	chr7:116394200-116410800	Strong transcription	Muscle Satellite Cultured Cells	--
30	chr7:116394800-116405600	Weak transcription	Fetal Intestine Small	intestine
31	chr7:116394800-116407000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chr7:116395400-116401000	Strong transcription	Osteobl	bone
33	chr7:116395600-116411800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr7:116395800-116406600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr7:116396400-116401000	Strong transcription	HMEC	breast
36	chr7:116396800-116400400	Strong transcription	Psoas Muscle	Psoas
37	chr7:116397000-116400400	Strong transcription	Liver	Liver
38	chr7:116397400-116399600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr7:116397400-116399800	Genic enhancers	HUVEC	blood vessel
40	chr7:116397400-116400000	Strong transcription	NH-A	brain
41	chr7:116397400-116401200	Strong transcription	NHEK	skin
42	chr7:116397400-116401800	Strong transcription	HSMM	muscle
43	chr7:116397800-116402000	Weak transcription	Fetal Lung	lung
44	chr7:116398000-116399800	Strong transcription	Hela-S3	cervix
45	chr7:116398200-116401000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
46	chr7:116398600-116400200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
47	chr7:116398600-116400200	Strong transcription	Skeletal Muscle Female	skeletal muscle

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