The 2.0 version of rSNPBase

Variant report

Variant rs38857
Chromosome Location chr7:116365413-116365414
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:43 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr7:116351800-116407000 Weak transcription Duodenum Mucosa Duodenum
2 chr7:116353200-116366600 Weak transcription Fetal Intestine Small intestine
3 chr7:116354000-116366200 Weak transcription HepG2 liver
4 chr7:116357400-116366600 Weak transcription Pancreas Pancrea
5 chr7:116357400-116366600 Weak transcription Psoas Muscle Psoas
6 chr7:116357400-116366800 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
7 chr7:116357400-116371200 Weak transcription Fetal Stomach stomach
8 chr7:116357400-116409800 Weak transcription Placenta Amnion Placenta Amnion
9 chr7:116357600-116366400 Weak transcription HUVEC blood vessel
10 chr7:116357600-116366600 Weak transcription HSMM muscle
11 chr7:116357600-116366800 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
12 chr7:116357600-116366800 Weak transcription Fetal Muscle Leg muscle
13 chr7:116357600-116370000 Weak transcription HMEC breast
14 chr7:116357600-116370200 Weak transcription Hela-S3 cervix
15 chr7:116357600-116376600 Weak transcription NH-A brain
16 chr7:116357800-116366600 Weak transcription Osteobl bone
17 chr7:116357800-116367000 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
18 chr7:116357800-116367000 Weak transcription NHDF-Ad bronchial
19 chr7:116358200-116366400 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
20 chr7:116358200-116366600 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
21 chr7:116358200-116367400 Weak transcription Muscle Satellite Cultured Cells --
22 chr7:116362200-116367400 Weak transcription Fetal Intestine Large intestine
23 chr7:116364800-116365800 Genic enhancers Breast Myoepithelial Primary Cells Breast
24 chr7:116364800-116368200 Enhancers Skeletal Muscle Male skeletal muscle
25 chr7:116365000-116373000 Weak transcription iPS-15b Cell Line embryonic stem cell
26 chr7:116365200-116366400 Weak transcription ES-I3 Cell Line embryonic stem cell
27 chr7:116365200-116366400 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
28 chr7:116365200-116366400 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
29 chr7:116365200-116366400 Weak transcription Liver Liver
30 chr7:116365200-116366400 Weak transcription Brain Inferior Temporal Lobe brain
31 chr7:116365200-116366400 Weak transcription Skeletal Muscle Female skeletal muscle
32 chr7:116365200-116366600 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
33 chr7:116365200-116366600 Weak transcription Placenta Placenta
34 chr7:116365200-116366600 Weak transcription Right Ventricle heart
35 chr7:116365200-116366800 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
36 chr7:116365200-116367600 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
37 chr7:116365200-116367600 Strong transcription Foreskin Keratinocyte Primary Cells skin02 Skin
38 chr7:116365200-116369000 Strong transcription NHEK skin
39 chr7:116365200-116375000 Weak transcription HUES6 Cell Line embryonic stem cell
40 chr7:116365200-116376600 Weak transcription H9 Cell Line embryonic stem cell
41 chr7:116365400-116366200 Weak transcription A549 lung
42 chr7:116365400-116366400 Weak transcription Stomach Mucosa stomach
43 chr7:116365400-116366600 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin

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Last update: Aug 31, 2015