Variant report

Variant	rs38856
Chromosome Location	chr7:116358487-116358488
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:116356281..116359013-chr7:116422388..116424380,2	MCF-7	breast:

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs2237711	0.82[ASN][1000 genomes]
rs38853	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs38857	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:116351800-116407000	Weak transcription	Duodenum Mucosa	Duodenum
2	chr7:116353200-116366600	Weak transcription	Fetal Intestine Small	intestine
3	chr7:116354000-116366200	Weak transcription	HepG2	liver
4	chr7:116357400-116364800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr7:116357400-116364800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr7:116357400-116364800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr7:116357400-116366600	Weak transcription	Pancreas	Pancrea
8	chr7:116357400-116366600	Weak transcription	Psoas Muscle	Psoas
9	chr7:116357400-116366800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr7:116357400-116371200	Weak transcription	Fetal Stomach	stomach
11	chr7:116357400-116409800	Weak transcription	Placenta Amnion	Placenta Amnion
12	chr7:116357600-116364600	Weak transcription	NHEK	skin
13	chr7:116357600-116364800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr7:116357600-116366400	Weak transcription	HUVEC	blood vessel
15	chr7:116357600-116366600	Weak transcription	HSMM	muscle
16	chr7:116357600-116366800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr7:116357600-116366800	Weak transcription	Fetal Muscle Leg	muscle
18	chr7:116357600-116370000	Weak transcription	HMEC	breast
19	chr7:116357600-116370200	Weak transcription	Hela-S3	cervix
20	chr7:116357600-116376600	Weak transcription	NH-A	brain
21	chr7:116357800-116364600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr7:116357800-116366600	Weak transcription	Osteobl	bone
23	chr7:116357800-116367000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr7:116357800-116367000	Weak transcription	NHDF-Ad	bronchial
25	chr7:116358200-116366400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr7:116358200-116366600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr7:116358200-116367400	Weak transcription	Muscle Satellite Cultured Cells	--
28	chr7:116358400-116364400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr7:116358400-116364600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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