Variant report

Variant	rs11773447
Chromosome Location	chr7:40338371-40338372
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 110 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:98)

rs_ID	r²[population]
rs10224001	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10227273	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10227399	0.91[CEU][hapmap];0.83[CHB][hapmap];0.86[JPT][hapmap];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10231582	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10231838	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10231959	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10237281	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10245165	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10247300	0.89[CHD][hapmap];0.80[ASN][1000 genomes]
rs10248078	0.83[ASN][1000 genomes]
rs10251283	0.86[CEU][hapmap];0.86[CHB][hapmap];0.86[JPT][hapmap];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10252609	0.83[ASN][1000 genomes]
rs10258258	0.91[CEU][hapmap];0.83[CHB][hapmap];0.86[JPT][hapmap];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10260853	0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10261911	0.83[ASN][1000 genomes]
rs10265671	0.81[ASN][1000 genomes]
rs10265895	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10266351	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10266722	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10268749	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10268863	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10270125	0.91[CEU][hapmap];0.83[CHB][hapmap];0.91[CHD][hapmap];0.88[GIH][hapmap];0.86[JPT][hapmap];0.97[TSI][hapmap];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10270438	0.91[CEU][hapmap];0.83[CHB][hapmap];0.86[JPT][hapmap];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10278370	0.91[CEU][hapmap];0.82[CHB][hapmap];0.85[JPT][hapmap];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10280605	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10951628	0.81[ASN][1000 genomes]
rs10951629	0.88[ASN][1000 genomes]
rs10951630	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10951633	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.97[TSI][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11763124	0.83[ASN][1000 genomes]
rs11764459	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11764497	0.88[ASN][1000 genomes]
rs11766698	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11773663	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11977946	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12538240	0.94[ASN][1000 genomes]
rs12668394	0.83[ASN][1000 genomes]
rs12669315	0.89[ASW][hapmap];0.91[CEU][hapmap];0.83[CHB][hapmap];0.95[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.85[LWK][hapmap];0.88[TSI][hapmap];1.00[YRI][hapmap];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12701807	0.83[ASN][1000 genomes]
rs12701810	0.82[CHD][hapmap];0.81[ASN][1000 genomes]
rs12701812	0.91[CEU][hapmap];0.83[CHB][hapmap];0.95[CHD][hapmap];0.88[GIH][hapmap];0.86[JPT][hapmap];1.00[TSI][hapmap];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12701815	0.87[CEU][hapmap];0.91[CHD][hapmap];0.91[GIH][hapmap];0.86[JPT][hapmap];0.80[TSI][hapmap];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13227773	0.84[CHB][hapmap];0.83[JPT][hapmap];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13235423	0.81[ASN][1000 genomes]
rs13235432	0.81[ASN][1000 genomes]
rs13244588	0.83[ASN][1000 genomes]
rs13247751	0.83[ASN][1000 genomes]
rs13247974	0.83[ASN][1000 genomes]
rs17171668	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17171672	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1948791	1.00[CEU][hapmap];0.91[CHB][hapmap];0.98[CHD][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];1.00[TSI][hapmap];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2422303	0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28477494	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs28637571	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2901707	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3980358	0.90[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4129802	0.82[CHD][hapmap]
rs4129803	0.91[CEU][hapmap];0.83[CHB][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4398808	0.87[CEU][hapmap];0.87[CHB][hapmap];0.86[JPT][hapmap];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4433031	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4478481	0.85[ASN][1000 genomes]
rs4480017	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4571645	0.83[ASN][1000 genomes]
rs4585651	0.81[ASN][1000 genomes]
rs4637704	0.82[CHD][hapmap];0.81[ASN][1000 genomes]
rs4720355	0.81[ASN][1000 genomes]
rs4723935	0.80[CHB][hapmap]
rs4723936	0.83[CEU][hapmap];0.89[CHD][hapmap];0.81[JPT][hapmap];0.86[TSI][hapmap]
rs4723938	0.91[CEU][hapmap];0.82[CHB][hapmap];0.95[CHD][hapmap];0.95[GIH][hapmap];0.95[JPT][hapmap];0.86[TSI][hapmap];0.88[ASN][1000 genomes]
rs4723946	0.91[CEU][hapmap];0.83[CHB][hapmap];0.86[JPT][hapmap];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs55648745	0.83[ASN][1000 genomes]
rs57575441	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6462966	0.88[ASN][1000 genomes]
rs6462967	0.95[CEU][hapmap];0.83[CHB][hapmap];0.95[JPT][hapmap];0.86[ASN][1000 genomes]
rs6462970	0.91[CEU][hapmap];0.87[CHB][hapmap];0.86[JPT][hapmap];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6944348	0.82[ASN][1000 genomes]
rs6946123	0.81[ASN][1000 genomes]
rs6946980	0.91[CEU][hapmap];0.83[CHB][hapmap];0.95[JPT][hapmap];0.87[ASN][1000 genomes]
rs6960480	1.00[CEU][hapmap];0.91[CHB][hapmap];0.98[CHD][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];1.00[TSI][hapmap];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6961025	0.81[ASN][1000 genomes]
rs6961146	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6961151	0.81[ASN][1000 genomes]
rs6962341	0.91[CEU][hapmap];0.83[CHB][hapmap];0.93[CHD][hapmap];0.88[GIH][hapmap];0.86[JPT][hapmap];1.00[TSI][hapmap];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6963317	0.83[ASN][1000 genomes]
rs6964864	0.84[CHD][hapmap]
rs6967242	0.91[CEU][hapmap];0.83[CHB][hapmap];0.86[JPT][hapmap];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6969419	0.84[CHD][hapmap]
rs6979118	0.91[CEU][hapmap];0.87[CHB][hapmap];0.86[JPT][hapmap];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs756328	0.84[CHD][hapmap]
rs7778070	0.83[ASN][1000 genomes]
rs7791590	1.00[ASW][hapmap];1.00[CEU][hapmap];0.86[CHB][hapmap];0.95[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7798925	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7800400	0.84[ASN][1000 genomes]
rs7802836	0.91[CEU][hapmap];0.83[CHB][hapmap];0.95[CHD][hapmap];0.88[GIH][hapmap];0.86[JPT][hapmap];1.00[TSI][hapmap];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs952750	0.90[CEU][hapmap];0.83[CHB][hapmap];0.86[JPT][hapmap];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9638951	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9639831	0.91[CEU][hapmap];0.83[CHB][hapmap];1.00[JPT][hapmap]
rs9639834	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032278	chr7:40097371-40396300	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv464438	chr7:40193535-40350887	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv606710	chr7:40193535-40350887	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv1030648	chr7:40218618-41032599	Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv606711	chr7:40225129-40360257	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv887985	chr7:40265510-40586674	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv1033564	chr7:40273845-40417886	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	nsv817404	chr7:40295934-40573605	Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
9	nsv887986	chr7:40311382-40425140	Weak transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
10	nsv949540	chr7:40321357-40528147	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Strong transcription	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
11	nsv520748	chr7:40332518-40425140	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
12	nsv1017909	chr7:40337109-40427634	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:40317400-40344600	Weak transcription	Aorta	Aorta
2	chr7:40335400-40339200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr7:40335800-40341400	Enhancers	HUVEC	blood vessel
4	chr7:40336000-40339200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr7:40336000-40340200	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr7:40336200-40340600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr7:40336600-40339000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr7:40336800-40338600	Enhancers	Osteobl	bone
9	chr7:40336800-40339200	Enhancers	HSMMtube	muscle
10	chr7:40336800-40342000	Enhancers	NH-A	brain
11	chr7:40336800-40342600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr7:40337000-40339200	Enhancers	NHEK	skin
13	chr7:40337000-40341400	Enhancers	HMEC	breast
14	chr7:40337000-40341800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr7:40337000-40342600	Enhancers	HSMM	muscle
16	chr7:40337200-40339400	Enhancers	NHDF-Ad	bronchial
17	chr7:40337400-40341400	Enhancers	Dnd41	blood
18	chr7:40337600-40338800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr7:40337600-40339000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr7:40337600-40339200	Enhancers	ES-I3 Cell Line	embryonic stem cell
21	chr7:40337600-40339200	Enhancers	HUES48 Cell Line	embryonic stem cell
22	chr7:40337600-40339200	Enhancers	Primary hematopoietic stem cells short term culture	blood
23	chr7:40337600-40339400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr7:40337800-40338600	Weak transcription	NHLF	lung
25	chr7:40337800-40338800	Flanking Active TSS	Muscle Satellite Cultured Cells	--
26	chr7:40337800-40341000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr7:40338000-40339200	Enhancers	iPS-20b Cell Line	embryonic stem cell
28	chr7:40338200-40339000	Enhancers	iPS-15b Cell Line	embryonic stem cell
29	chr7:40338200-40339000	Enhancers	iPS-18 Cell Line	embryonic stem cell

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