Variant report

Variant	rs4129802
Chromosome Location	chr7:40307178-40307179
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 84 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:76)

rs_ID	r²[population]
rs10226951	0.81[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs10227399	0.83[JPT][hapmap]
rs10247300	0.91[ASW][hapmap];0.86[CEU][hapmap];0.91[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];0.86[JPT][hapmap];1.00[LWK][hapmap];0.94[MKK][hapmap];0.95[YRI][hapmap];0.81[ASN][1000 genomes]
rs10248078	0.90[ASN][1000 genomes]
rs10251283	0.86[JPT][hapmap]
rs10252609	0.89[ASN][1000 genomes]
rs10258258	0.86[JPT][hapmap]
rs10261911	0.90[ASN][1000 genomes]
rs10262201	0.87[CHB][hapmap];0.91[JPT][hapmap];0.87[ASN][1000 genomes]
rs10270125	0.82[CHD][hapmap];0.83[JPT][hapmap]
rs10270438	0.87[JPT][hapmap]
rs10278370	0.81[JPT][hapmap]
rs10282170	0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs10951628	0.84[ASN][1000 genomes]
rs10951629	0.83[ASN][1000 genomes]
rs11762020	0.81[ASN][1000 genomes]
rs11763124	0.87[ASN][1000 genomes]
rs11764497	0.83[ASN][1000 genomes]
rs11773447	0.82[CHD][hapmap]
rs12668394	0.90[ASN][1000 genomes]
rs12669315	0.87[CHD][hapmap]
rs12701807	0.87[CHB][hapmap];0.91[JPT][hapmap];0.91[YRI][hapmap];0.90[ASN][1000 genomes]
rs12701810	0.91[ASW][hapmap];0.86[CEU][hapmap];0.91[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];0.95[JPT][hapmap];1.00[LWK][hapmap];0.81[MKK][hapmap];0.95[YRI][hapmap];0.86[ASN][1000 genomes]
rs12701812	0.86[CHD][hapmap];0.87[JPT][hapmap]
rs12701815	0.82[CHD][hapmap];0.83[JPT][hapmap]
rs13227773	0.89[JPT][hapmap];0.94[YRI][hapmap]
rs13235040	0.84[ASN][1000 genomes]
rs13235423	0.85[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs13235432	0.83[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs13244588	0.90[ASN][1000 genomes]
rs13247751	0.90[ASN][1000 genomes]
rs13247974	0.90[ASN][1000 genomes]
rs1948791	0.85[CHD][hapmap]
rs2329771	0.80[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs2422303	0.80[ASN][1000 genomes]
rs3897941	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.86[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs4129803	0.84[ASN][1000 genomes]
rs4398808	0.83[JPT][hapmap]
rs4571645	0.83[ASN][1000 genomes]
rs4585651	0.89[ASN][1000 genomes]
rs4637704	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.95[MEX][hapmap];1.00[MKK][hapmap];0.90[TSI][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4720355	0.84[ASN][1000 genomes]
rs4723935	0.85[CHB][hapmap];0.90[JPT][hapmap];0.81[ASN][1000 genomes]
rs4723936	0.87[CHB][hapmap];0.93[CHD][hapmap];0.83[JPT][hapmap];0.81[ASN][1000 genomes]
rs4723938	0.87[CHD][hapmap];0.83[ASN][1000 genomes]
rs4723946	0.87[JPT][hapmap];0.95[YRI][hapmap];0.80[ASN][1000 genomes]
rs55648745	0.90[ASN][1000 genomes]
rs57205249	0.81[ASN][1000 genomes]
rs58664838	0.81[ASN][1000 genomes]
rs61003774	0.81[ASN][1000 genomes]
rs6462966	0.83[ASN][1000 genomes]
rs6462967	0.83[ASN][1000 genomes]
rs6462968	0.84[LWK][hapmap]
rs6462970	0.86[JPT][hapmap]
rs67382823	0.81[ASN][1000 genomes]
rs6944348	0.89[ASN][1000 genomes]
rs6946123	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6946980	0.82[ASN][1000 genomes]
rs6955478	0.81[ASN][1000 genomes]
rs6956802	0.87[ASN][1000 genomes]
rs6960480	0.85[CHD][hapmap]
rs6961025	0.84[ASN][1000 genomes]
rs6961151	0.84[ASN][1000 genomes]
rs6962341	0.89[CHD][hapmap];0.87[JPT][hapmap];0.80[ASN][1000 genomes]
rs6963317	0.90[ASN][1000 genomes]
rs6964864	0.87[CHB][hapmap];0.98[CHD][hapmap];0.91[JPT][hapmap];0.87[ASN][1000 genomes]
rs6967242	0.87[JPT][hapmap];0.95[YRI][hapmap]
rs6969419	0.87[CHB][hapmap];0.98[CHD][hapmap];0.91[JPT][hapmap];0.83[ASN][1000 genomes]
rs6979118	0.87[JPT][hapmap];0.80[ASN][1000 genomes]
rs73131776	0.81[ASN][1000 genomes]
rs756328	0.87[CHB][hapmap];0.98[CHD][hapmap];0.91[JPT][hapmap];0.83[ASN][1000 genomes]
rs7778070	0.87[ASN][1000 genomes]
rs7791590	0.83[CHD][hapmap]
rs7800400	0.85[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs7802836	0.86[CHD][hapmap];0.87[JPT][hapmap]
rs952750	0.87[JPT][hapmap];1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032278	chr7:40097371-40396300	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv464438	chr7:40193535-40350887	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv606710	chr7:40193535-40350887	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv1030648	chr7:40218618-41032599	Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv606711	chr7:40225129-40360257	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv887985	chr7:40265510-40586674	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv1033564	chr7:40273845-40417886	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	nsv817404	chr7:40295934-40573605	Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:40304000-40307200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr7:40304200-40307600	Weak transcription	Fetal Heart	heart
3	chr7:40304400-40307800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
4	chr7:40304400-40323600	Weak transcription	HepG2	liver
5	chr7:40304600-40307200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
6	chr7:40304800-40309000	Weak transcription	Primary hematopoietic stem cells	blood
7	chr7:40306400-40307200	Weak transcription	Monocytes-CD14+_RO01746	blood
8	chr7:40306600-40309000	Enhancers	Primary neutrophils fromperipheralblood	blood

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