Variant report

Variant	rs11773524
Chromosome Location	chr7:108259498-108259499
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:108256349..108259535-chr7:108260988..108264962,5	K562	blood:

Extended variants
information (count: 25 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs1029707	0.92[CEU][hapmap];0.87[CHB][hapmap];0.94[JPT][hapmap];0.84[ASN][1000 genomes]
rs1029708	0.92[CEU][hapmap];0.87[CHB][hapmap];0.94[JPT][hapmap];0.85[ASN][1000 genomes]
rs11767037	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11767071	0.87[ASN][1000 genomes]
rs11773875	0.91[CEU][hapmap];0.87[CHB][hapmap];0.93[JPT][hapmap];0.85[ASN][1000 genomes]
rs17341955	0.96[CEU][hapmap];0.87[CHB][hapmap];0.94[JPT][hapmap];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17426638	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2108731	0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2215141	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34505662	0.85[ASN][1000 genomes]
rs4298438	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs55760662	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs58954269	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6466244	0.96[CEU][hapmap];0.87[CHB][hapmap];0.89[GIH][hapmap];0.94[JPT][hapmap];0.82[TSI][hapmap];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs67940245	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6945788	0.82[AFR][1000 genomes];0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6949766	0.92[CEU][hapmap];0.80[CHB][hapmap];0.94[JPT][hapmap];0.85[ASN][1000 genomes]
rs6951751	0.83[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs726608	0.83[ASW][hapmap];0.92[CEU][hapmap];0.87[CHB][hapmap];0.89[GIH][hapmap];0.94[JPT][hapmap];0.87[LWK][hapmap];0.87[TSI][hapmap];0.92[YRI][hapmap];0.85[AFR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7790890	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7795236	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs975124	0.96[CEU][hapmap];0.87[CHB][hapmap];0.94[JPT][hapmap];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9918599	0.92[CEU][hapmap];0.87[CHB][hapmap];0.94[JPT][hapmap];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3348839	chr7:107377311-108286538	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	91 gene(s)	inside rSNPs	diseases
2	nsv817371	chr7:108199882-108649799	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs11773524	THAP5	cis	lymphoblastoid	seeQTL
rs11773524	THAP5	Cis_1M	lymphoblastoid	RTeQTL
rs11773524	NRCAM	cis	cerebellum	SCAN

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:108255600-108259800	Weak transcription	Fetal Brain Male	brain
2	chr7:108257800-108270800	Weak transcription	Right Atrium	heart
3	chr7:108258200-108259600	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr7:108258200-108259600	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr7:108258200-108261000	Enhancers	Adipose Nuclei	Adipose
6	chr7:108258600-108259600	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr7:108258800-108261400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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