Variant report

Variant	rs7795236
Chromosome Location	chr7:108259710-108259711
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1029707	0.85[CEU][hapmap];0.82[JPT][hapmap]
rs1029708	0.83[CEU][hapmap];0.83[JPT][hapmap]
rs11767037	0.81[EUR][1000 genomes]
rs11773524	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11773875	0.81[CEU][hapmap]
rs17341955	0.86[CEU][hapmap];0.83[JPT][hapmap];0.81[EUR][1000 genomes]
rs17426638	0.81[EUR][1000 genomes]
rs2215141	0.81[EUR][1000 genomes]
rs4298438	0.83[EUR][1000 genomes]
rs55760662	0.81[EUR][1000 genomes]
rs58954269	0.81[EUR][1000 genomes]
rs6466244	0.89[CEU][hapmap];0.82[JPT][hapmap];0.82[EUR][1000 genomes]
rs67940245	0.82[EUR][1000 genomes]
rs6945788	0.83[EUR][1000 genomes]
rs6949766	0.83[CEU][hapmap];0.83[JPT][hapmap]
rs726608	0.85[CEU][hapmap];0.82[JPT][hapmap];0.83[EUR][1000 genomes]
rs7790890	0.81[EUR][1000 genomes]
rs975124	0.86[CEU][hapmap];0.83[JPT][hapmap]
rs9918599	0.83[CEU][hapmap];0.83[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3348839	chr7:107377311-108286538	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	91 gene(s)	inside rSNPs	diseases
2	nsv817371	chr7:108199882-108649799	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7795236	THAP5	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:108255600-108259800	Weak transcription	Fetal Brain Male	brain
2	chr7:108257800-108270800	Weak transcription	Right Atrium	heart
3	chr7:108258200-108261000	Enhancers	Adipose Nuclei	Adipose
4	chr7:108258800-108261400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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