Variant report

Variant	rs11773902
Chromosome Location	chr7:152501825-152501826
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10464441	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10952373	0.88[CEU][hapmap];0.86[ASN][1000 genomes]
rs11490834	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11760940	0.81[YRI][hapmap]
rs11761126	0.81[EUR][1000 genomes]
rs11762625	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11764501	0.90[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11766953	0.95[AFR][1000 genomes];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11768896	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11769016	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12535713	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.82[EUR][1000 genomes]
rs1574987	0.82[EUR][1000 genomes]
rs34636157	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3864526	0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4071561	0.83[CEU][hapmap]
rs4410819	0.81[CHB][hapmap];0.94[JPT][hapmap]
rs4726207	0.83[CEU][hapmap]
rs55912729	0.95[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs56216502	0.89[ASN][1000 genomes]
rs62494966	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs67549632	0.87[AFR][1000 genomes]
rs6969156	0.89[CHB][hapmap];1.00[JPT][hapmap]
rs7790480	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9969169	0.89[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033496	chr7:152125903-152615617	Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
2	nsv539208	chr7:152125903-152615617	Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
3	nsv1027100	chr7:152294734-152935140	Flanking Bivalent TSS/Enh Enhancers ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
4	nsv831193	chr7:152353544-152592678	Strong transcription Active TSS Genic enhancers Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
5	nsv532221	chr7:152371297-152884547	Weak transcription Strong transcription Flanking Bivalent TSS/Enh Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
6	nsv868873	chr7:152371297-152900113	Weak transcription Enhancers Bivalent/Poised TSS Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
7	nsv970978	chr7:152501553-152515063	Weak transcription Strong transcription Enhancers	TF binding region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:55 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:152482800-152518600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr7:152486800-152515000	Weak transcription	Fetal Intestine Small	intestine
3	chr7:152488400-152517800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr7:152488800-152545600	Weak transcription	Primary T cells from cord blood	blood
5	chr7:152489800-152568800	Weak transcription	Hela-S3	cervix
6	chr7:152491200-152517600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr7:152491600-152520200	Weak transcription	Primary B cells from peripheral blood	blood
8	chr7:152493000-152518600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
9	chr7:152493200-152517200	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr7:152493200-152517600	Weak transcription	Pancreas	Pancrea
11	chr7:152493200-152518600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr7:152494400-152517400	Weak transcription	Lung	lung
13	chr7:152494800-152517600	Weak transcription	HUES6 Cell Line	embryonic stem cell
14	chr7:152497000-152517600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr7:152497600-152549200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr7:152498400-152515800	Weak transcription	HUES64 Cell Line	embryonic stem cell
17	chr7:152498400-152516000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
18	chr7:152498400-152517600	Weak transcription	Right Ventricle	heart
19	chr7:152498400-152528200	Weak transcription	Primary monocytes fromperipheralblood	blood
20	chr7:152498400-152556000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr7:152498400-152559200	Weak transcription	Monocytes-CD14+_RO01746	blood
22	chr7:152498600-152516800	Weak transcription	Primary T helper cells fromperipheralblood	blood
23	chr7:152498600-152520000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr7:152498600-152526800	Weak transcription	Cortex derived primary cultured neurospheres	brain
25	chr7:152498800-152502800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
26	chr7:152498800-152515600	Weak transcription	Left Ventricle	heart
27	chr7:152498800-152517600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr7:152498800-152518600	Weak transcription	Rectal Mucosa Donor 29	rectum
29	chr7:152498800-152518800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
30	chr7:152498800-152520000	Weak transcription	Duodenum Smooth Muscle	Duodenum
31	chr7:152498800-152520600	Weak transcription	Sigmoid Colon	Sigmoid Colon
32	chr7:152498800-152539600	Weak transcription	Fetal Muscle Trunk	muscle
33	chr7:152499000-152517800	Weak transcription	Ovary	ovary
34	chr7:152499200-152546800	Weak transcription	Brain Hippocampus Middle	brain
35	chr7:152499600-152502200	Weak transcription	HSMM	muscle
36	chr7:152499800-152520200	Weak transcription	Rectal Smooth Muscle	rectum
37	chr7:152500000-152502000	Enhancers	Primary neutrophils fromperipheralblood	blood
38	chr7:152500600-152517200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr7:152500600-152517200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
40	chr7:152500600-152520000	Weak transcription	Fetal Intestine Large	intestine
41	chr7:152500600-152556000	Weak transcription	Primary T cells fromperipheralblood	blood
42	chr7:152500800-152517400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
43	chr7:152501000-152516000	Weak transcription	HUES48 Cell Line	embryonic stem cell
44	chr7:152501200-152517600	Weak transcription	Aorta	Aorta
45	chr7:152501200-152517800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
46	chr7:152501400-152517600	Weak transcription	Fetal Stomach	stomach
47	chr7:152501400-152550400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
48	chr7:152501600-152502000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
49	chr7:152501600-152502000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
50	chr7:152501600-152502000	Enhancers	Fetal Lung	lung

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