Variant report

Variant	rs4726207
Chromosome Location	chr7:152496656-152496657
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10464441	0.84[CEU][hapmap]
rs11760209	0.89[AFR][1000 genomes];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11767520	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11769016	0.84[CEU][hapmap]
rs11773902	0.83[CEU][hapmap]
rs12535713	0.84[CEU][hapmap];0.86[CHD][hapmap];0.83[MEX][hapmap]
rs1568734	0.80[GIH][hapmap]
rs2689446	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs28587481	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs34089018	0.88[AMR][1000 genomes]
rs4071561	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap]
rs4725467	0.88[JPT][hapmap]
rs4726213	0.81[AMR][1000 genomes]
rs6969156	0.84[CHD][hapmap]
rs9969169	0.84[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949483	chr7:151791158-152499822	Strong transcription Weak transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	68 gene(s)	inside rSNPs	diseases
2	nsv1033496	chr7:152125903-152615617	Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
3	nsv539208	chr7:152125903-152615617	Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
4	nsv1027100	chr7:152294734-152935140	Flanking Bivalent TSS/Enh Enhancers ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
5	nsv831193	chr7:152353544-152592678	Strong transcription Active TSS Genic enhancers Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
6	nsv532221	chr7:152371297-152884547	Weak transcription Strong transcription Flanking Bivalent TSS/Enh Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
7	nsv868873	chr7:152371297-152900113	Weak transcription Enhancers Bivalent/Poised TSS Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
8	esv1796726	chr7:152463181-152498103	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	nsv970977	chr7:152491164-152499717	Weak transcription Enhancers Strong transcription ZNF genes & repeats	TF binding region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:152482600-152500000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
2	chr7:152482800-152518600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr7:152486800-152515000	Weak transcription	Fetal Intestine Small	intestine
4	chr7:152488400-152517800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chr7:152488800-152545600	Weak transcription	Primary T cells from cord blood	blood
6	chr7:152489800-152568800	Weak transcription	Hela-S3	cervix
7	chr7:152491200-152517600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr7:152491600-152520200	Weak transcription	Primary B cells from peripheral blood	blood
9	chr7:152493000-152500000	Weak transcription	HUES48 Cell Line	embryonic stem cell
10	chr7:152493000-152501800	Weak transcription	Psoas Muscle	Psoas
11	chr7:152493000-152518600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
12	chr7:152493200-152517200	Weak transcription	H1 Cell Line	embryonic stem cell
13	chr7:152493200-152517600	Weak transcription	Pancreas	Pancrea
14	chr7:152493200-152518600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr7:152494200-152500000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr7:152494400-152517400	Weak transcription	Lung	lung
17	chr7:152494800-152517600	Weak transcription	HUES6 Cell Line	embryonic stem cell
18	chr7:152495200-152500000	Weak transcription	Primary T cells fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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