Variant report

Variant	rs11774303
Chromosome Location	chr8:58137742-58137743
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:58129899..58132563-chr8:58137038..58139171,2	K562	blood:
2	chr8:58137340..58139312-chr8:58141710..58144515,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000253301	Chromatin interaction

Extended variants
information (count: 96 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:77)

rs_ID	r²[population]
rs10086791	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs10092884	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10092993	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10093755	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10108204	0.82[JPT][hapmap];0.88[YRI][hapmap]
rs10808915	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs11774645	0.80[JPT][hapmap]
rs11774697	0.81[JPT][hapmap]
rs11776527	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap]
rs11785258	0.81[JPT][hapmap]
rs11785260	0.81[JPT][hapmap]
rs11786043	0.81[JPT][hapmap]
rs11786074	0.81[JPT][hapmap]
rs11787247	0.81[JPT][hapmap]
rs11990600	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11992943	0.94[ASW][hapmap];1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.84[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12682137	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs16921693	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs16921694	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs16921695	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs16921701	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs16921751	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap]
rs16921754	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap]
rs16921777	0.96[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap]
rs17194487	0.83[CHD][hapmap];0.81[JPT][hapmap]
rs17215412	0.93[CHB][hapmap]
rs17802082	0.80[JPT][hapmap]
rs1874375	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2017474	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2028533	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2047265	0.80[AFR][1000 genomes]
rs28408163	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28408204	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28449911	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28548459	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28578130	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28690714	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2873637	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs4738578	0.83[CEU][hapmap]
rs55868332	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs56325221	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56406973	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs57445614	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs59079777	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs59139449	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs59545981	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs60398072	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6471591	0.82[EUR][1000 genomes]
rs6980581	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6980596	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6984401	0.85[EUR][1000 genomes]
rs6984434	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6985921	0.80[EUR][1000 genomes]
rs6985975	0.82[JPT][hapmap];0.80[EUR][1000 genomes]
rs6989809	0.86[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.81[ASN][1000 genomes]
rs6997857	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6998040	0.82[CHD][hapmap]
rs6999005	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6999376	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7001233	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7007444	0.86[AFR][1000 genomes];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72649134	0.81[ASN][1000 genomes]
rs72649136	0.83[ASN][1000 genomes]
rs72649137	0.83[ASN][1000 genomes]
rs72649138	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72649139	0.83[ASN][1000 genomes]
rs7460059	0.81[JPT][hapmap]
rs7463453	0.83[CHD][hapmap];0.81[JPT][hapmap]
rs7813252	0.81[JPT][hapmap]
rs7814991	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7821125	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap]
rs7823911	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7837180	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7837765	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs870518	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs882429	0.81[JPT][hapmap]
rs903716	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:19 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758161	chr8:57930392-58474449	Enhancers Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	esv2759618	chr8:57930392-58474449	Enhancers ZNF genes & repeats Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv533217	chr8:57991065-58789001	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
4	esv12840	chr8:58046936-58196713	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	esv3432915	chr8:58055026-58271178	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	esv1793550	chr8:58063507-58215957	Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
7	esv1804272	chr8:58063507-58215957	ZNF genes & repeats Bivalent/Poised TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
8	esv1814738	chr8:58063507-58215957	ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
9	nsv428200	chr8:58063507-58215957	Weak transcription ZNF genes & repeats Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
10	nsv1034068	chr8:58078547-58161439	ZNF genes & repeats Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
11	nsv1028917	chr8:58080796-58158408	Enhancers ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
12	nsv831321	chr8:58086885-58237744	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
13	esv1800867	chr8:58104763-58148292	Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
14	nsv824637	chr8:58108164-58138395	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
15	nsv8351	chr8:58111632-58138437	ZNF genes & repeats Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
16	esv1804436	chr8:58113182-58141141	ZNF genes & repeats Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
17	nsv972527	chr8:58114741-58139696	Flanking Bivalent TSS/Enh Enhancers ZNF genes & repeats Bivalent Enhancer Weak transcription Bivalent/Poised TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
18	esv12323	chr8:58114793-58199474	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
19	esv33623	chr8:58118312-58143734	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:58135200-58141200	Enhancers	HUVEC	blood vessel
2	chr8:58135800-58138200	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr8:58135800-58138200	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr8:58136000-58138200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
5	chr8:58136200-58138200	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chr8:58136400-58138000	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr8:58136400-58138000	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr8:58136400-58138000	Enhancers	Lung	lung
9	chr8:58136600-58139200	Enhancers	iPS-20b Cell Line	embryonic stem cell
10	chr8:58137200-58138000	Enhancers	ES-I3 Cell Line	embryonic stem cell
11	chr8:58137400-58137800	Enhancers	Fetal Kidney	kidney
12	chr8:58137400-58138400	Enhancers	HepG2	liver
13	chr8:58137400-58139000	Enhancers	Hela-S3	cervix
14	chr8:58137600-58137800	Enhancers	H9 Cell Line	embryonic stem cell
15	chr8:58137600-58137800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr8:58137600-58137800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr8:58137600-58137800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr8:58137600-58137800	Enhancers	Placenta	Placenta
19	chr8:58137600-58137800	Enhancers	A549	lung
20	chr8:58137600-58138000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr8:58137600-58138000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr8:58137600-58139400	Enhancers	Stomach Mucosa	stomach
23	chr8:58137600-58140600	Enhancers	NHEK	skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links