Variant report

Variant	rs2017474
Chromosome Location	chr8:58144677-58144678
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:58143846..58145924-chr8:58146772..58148988,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-FAM110B-8	chr8:58143951-58145195	ENSG00000253301.1
2	lnc-FAM110B-8	chr8:58143951-58145388	NONHSAT126741
3	lnc-FAM110B-8	chr8:58142009-58146182	NONHSAT126744

Extended variants
information (count: 90 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:76)

rs_ID	r²[population]
rs10086791	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10092884	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10092993	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10093755	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10108204	0.83[JPT][hapmap];0.88[YRI][hapmap]
rs10808915	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11774303	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11774645	0.81[JPT][hapmap]
rs11774697	0.81[JPT][hapmap]
rs11776527	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11785258	0.81[JPT][hapmap]
rs11785260	0.81[JPT][hapmap]
rs11786043	0.81[JPT][hapmap]
rs11786074	0.81[JPT][hapmap]
rs11787247	0.81[JPT][hapmap]
rs11990600	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11992943	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12682137	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16921693	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs16921694	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs16921695	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs16921701	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs16921751	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap]
rs16921754	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16921777	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17194487	0.81[JPT][hapmap]
rs17215412	0.93[CHB][hapmap]
rs17802082	0.80[JPT][hapmap]
rs1874375	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2028533	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2047265	0.83[AFR][1000 genomes]
rs28408163	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28408204	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28449911	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28548459	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28578130	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28690714	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2873637	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs4738578	0.85[CEU][hapmap]
rs55868332	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs56325221	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56406973	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs57445614	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs59079777	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs59139449	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs59545981	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs60398072	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6471591	0.82[EUR][1000 genomes]
rs6980581	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6980596	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6984401	0.85[EUR][1000 genomes]
rs6984434	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6985921	0.80[EUR][1000 genomes]
rs6985975	0.83[JPT][hapmap];0.80[EUR][1000 genomes]
rs6989809	0.87[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.81[ASN][1000 genomes]
rs6997857	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6999005	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6999376	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7001233	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7007444	0.85[AFR][1000 genomes];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72649134	0.81[ASN][1000 genomes]
rs72649136	0.83[ASN][1000 genomes]
rs72649137	0.83[ASN][1000 genomes]
rs72649138	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72649139	0.83[ASN][1000 genomes]
rs7460059	0.81[JPT][hapmap]
rs7463453	0.81[JPT][hapmap]
rs7813252	0.81[JPT][hapmap]
rs7814991	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7821125	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap]
rs7823911	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7837180	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7837765	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs870518	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs882429	0.81[JPT][hapmap]
rs903716	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758161	chr8:57930392-58474449	Enhancers Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	esv2759618	chr8:57930392-58474449	Enhancers ZNF genes & repeats Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv533217	chr8:57991065-58789001	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
4	esv12840	chr8:58046936-58196713	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	esv3432915	chr8:58055026-58271178	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	esv1793550	chr8:58063507-58215957	Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
7	esv1804272	chr8:58063507-58215957	ZNF genes & repeats Bivalent/Poised TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
8	esv1814738	chr8:58063507-58215957	ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
9	nsv428200	chr8:58063507-58215957	Weak transcription ZNF genes & repeats Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
10	nsv1034068	chr8:58078547-58161439	ZNF genes & repeats Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
11	nsv1028917	chr8:58080796-58158408	Enhancers ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
12	nsv831321	chr8:58086885-58237744	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
13	esv1800867	chr8:58104763-58148292	Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
14	esv12323	chr8:58114793-58199474	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:58143600-58145600	Weak transcription	Fetal Lung	lung

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