Variant report

Variant	rs11774834
Chromosome Location	chr8:131045893-131045894
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:131045657..131048618-chr8:131053552..131056058,2	K562	blood:
2	chr8:131026997..131029711-chr8:131043546..131046545,5	MCF-7	breast:
3	chr8:131044244..131046702-chr8:131056220..131058655,2	MCF-7	breast:
4	chr8:131027513..131029162-chr8:131042930..131045910,2	K562	blood:
5	chr8:131028531..131030191-chr8:131045275..131047390,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000153310	Chromatin interaction

Extended variants
information (count: 77 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs10106205	0.85[CEU][hapmap]
rs11774067	0.87[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11774131	0.85[CEU][hapmap];1.00[AFR][1000 genomes]
rs11774686	1.00[AFR][1000 genomes]
rs11774917	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11775609	1.00[AFR][1000 genomes]
rs11775966	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11776863	1.00[AFR][1000 genomes]
rs11777289	1.00[CHD][hapmap];0.89[TSI][hapmap]
rs11778252	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11778454	1.00[AFR][1000 genomes]
rs11778460	1.00[CHD][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.95[TSI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11779191	0.87[CEU][hapmap];1.00[AFR][1000 genomes]
rs11781272	1.00[AFR][1000 genomes]
rs11781294	1.00[AFR][1000 genomes]
rs11781851	0.87[CEU][hapmap];1.00[AFR][1000 genomes]
rs11782152	1.00[CHD][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes]
rs11782883	0.87[CEU][hapmap];1.00[AFR][1000 genomes]
rs11783071	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11783860	0.87[CEU][hapmap];1.00[AFR][1000 genomes]
rs11783940	1.00[AFR][1000 genomes]
rs11787251	1.00[AFR][1000 genomes]
rs11787505	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1349847	1.00[GIH][hapmap];1.00[LWK][hapmap];0.83[MKK][hapmap]
rs17194770	1.00[LWK][hapmap]
rs4319146	0.82[CEU][hapmap];1.00[AFR][1000 genomes]
rs4639572	0.87[CEU][hapmap];1.00[CHD][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes]
rs6989965	1.00[AFR][1000 genomes]
rs6991549	0.85[CEU][hapmap];1.00[AFR][1000 genomes]
rs7003568	0.87[CEU][hapmap];1.00[AFR][1000 genomes]
rs7006802	0.85[CEU][hapmap];1.00[AFR][1000 genomes]
rs72720365	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72720387	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72720390	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72722303	1.00[AFR][1000 genomes]
rs72722310	1.00[AFR][1000 genomes]
rs72722316	1.00[AFR][1000 genomes]
rs72722318	1.00[AFR][1000 genomes]
rs72722323	1.00[AFR][1000 genomes]
rs72722325	1.00[AFR][1000 genomes]
rs72722339	1.00[AFR][1000 genomes]
rs72722344	1.00[AFR][1000 genomes]
rs72722347	1.00[AFR][1000 genomes]
rs72722349	1.00[AFR][1000 genomes]
rs72722355	1.00[AFR][1000 genomes]
rs72722360	1.00[AFR][1000 genomes]
rs72722361	1.00[AFR][1000 genomes]
rs72722368	1.00[AFR][1000 genomes]
rs72722370	1.00[AFR][1000 genomes]
rs72722372	1.00[AFR][1000 genomes]
rs72722374	1.00[AFR][1000 genomes]
rs72722375	1.00[AFR][1000 genomes]
rs72722379	1.00[AFR][1000 genomes]
rs72722380	1.00[AFR][1000 genomes]
rs72722381	1.00[AFR][1000 genomes]
rs72722384	1.00[AFR][1000 genomes]
rs72722386	1.00[AFR][1000 genomes]
rs72722388	1.00[AFR][1000 genomes]
rs72722392	1.00[AFR][1000 genomes]
rs72722394	1.00[AFR][1000 genomes]
rs72722396	1.00[AFR][1000 genomes]
rs72722397	1.00[AFR][1000 genomes]
rs752716	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018045	chr8:130863644-131122644	Flanking Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv612231	chr8:130868212-131132592	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
3	nsv524349	chr8:130868363-131132592	Enhancers Weak transcription Bivalent Enhancer Genic enhancers Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
4	nsv1021229	chr8:130887132-131057897	Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
5	nsv1017292	chr8:130887132-131107258	Strong transcription Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
6	nsv465808	chr8:130963259-131118658	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
7	nsv612232	chr8:130963259-131118658	Genic enhancers Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
8	nsv869334	chr8:131025093-131651487	Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
9	nsv915580	chr8:131025093-131667578	Weak transcription Genic enhancers Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
10	nsv465810	chr8:131039109-131331012	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
11	nsv612234	chr8:131039109-131331012	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
12	esv1799633	chr8:131039142-131078918	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region miRNA target site	3 gene(s)	inside rSNPs	diseases
13	esv1851852	chr8:131039142-131078918	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	Chromatin interactive region miRNA target site	3 gene(s)	inside rSNPs	diseases
14	nsv533085	chr8:131042781-131755007	Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:131041200-131046200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr8:131041400-131068600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr8:131041800-131047200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr8:131041800-131047200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr8:131042800-131047200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr8:131043000-131046000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr8:131043000-131047000	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr8:131043000-131047200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
9	chr8:131043000-131058200	Weak transcription	HUES48 Cell Line	embryonic stem cell
10	chr8:131044600-131046600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
11	chr8:131044600-131047200	Enhancers	Placenta	Placenta
12	chr8:131044800-131046200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr8:131044800-131046200	Enhancers	K562	blood
14	chr8:131044800-131046400	Flanking Active TSS	Hela-S3	cervix
15	chr8:131044800-131047800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr8:131045000-131046000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr8:131045000-131046000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr8:131045000-131046200	Enhancers	Primary monocytes fromperipheralblood	blood
19	chr8:131045000-131046200	Enhancers	Primary T cells fromperipheralblood	blood
20	chr8:131045000-131046200	Enhancers	Fetal Thymus	thymus
21	chr8:131045000-131046400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
22	chr8:131045200-131046000	Enhancers	Primary T helper cells PMA-I stimulated	--
23	chr8:131045200-131046200	Enhancers	Primary hematopoietic stem cells	blood
24	chr8:131045400-131046200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr8:131045400-131046400	Enhancers	Brain Anterior Caudate	brain
26	chr8:131045600-131046000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr8:131045600-131046000	Enhancers	Muscle Satellite Cultured Cells	--
28	chr8:131045600-131046200	Enhancers	Adipose Nuclei	Adipose
29	chr8:131045600-131046200	Enhancers	Brain Hippocampus Middle	brain
30	chr8:131045600-131046200	Enhancers	NHLF	lung
31	chr8:131045600-131046400	Enhancers	Primary hematopoietic stem cells short term culture	blood
32	chr8:131045600-131046400	Enhancers	Brain Angular Gyrus	brain
33	chr8:131045600-131046400	Enhancers	Brain Substantia Nigra	brain
34	chr8:131045600-131046600	Enhancers	Placenta Amnion	Placenta Amnion
35	chr8:131045800-131046000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
36	chr8:131045800-131046000	Weak transcription	NH-A	brain
37	chr8:131045800-131046000	Flanking Active TSS	Osteobl	bone
38	chr8:131045800-131046200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
39	chr8:131045800-131046200	Enhancers	Fetal Muscle Leg	muscle
40	chr8:131045800-131046200	Enhancers	Stomach Mucosa	stomach
41	chr8:131045800-131046200	Enhancers	A549	lung
42	chr8:131045800-131046400	Enhancers	Brain Cingulate Gyrus	brain
43	chr8:131045800-131046400	Enhancers	Spleen	Spleen
44	chr8:131045800-131046400	Bivalent Enhancer	HepG2	liver

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