Variant report

Variant	rs72722370
Chromosome Location	chr8:131198847-131198848
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:131192568..131195511-chr8:131198204..131200950,2	K562	blood:
2	chr8:131196822..131199241-chr8:131335887..131338128,2	K562	blood:
3	chr8:131192568..131194761-chr8:131198204..131200041,2	K562	blood:

Variant related genes	Relation type
ENSG00000153317	Chromatin interaction

Extended variants
information (count: 108 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:102)

rs_ID	r²[population]
rs11774067	1.00[AFR][1000 genomes]
rs11774131	1.00[AFR][1000 genomes]
rs11774346	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs11774686	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11774834	1.00[AFR][1000 genomes]
rs11774917	1.00[AFR][1000 genomes]
rs11775172	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs11775609	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11775966	1.00[AFR][1000 genomes]
rs11776863	1.00[AFR][1000 genomes]
rs11777289	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11777909	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11778072	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs11778252	1.00[AFR][1000 genomes]
rs11778454	1.00[AFR][1000 genomes]
rs11778460	1.00[AFR][1000 genomes]
rs11778504	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs11778712	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs11778881	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11779191	1.00[AFR][1000 genomes]
rs11781272	1.00[AFR][1000 genomes]
rs11781294	1.00[AFR][1000 genomes]
rs11781851	1.00[AFR][1000 genomes]
rs11781912	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11782152	1.00[AFR][1000 genomes]
rs11782883	1.00[AFR][1000 genomes]
rs11783071	1.00[AFR][1000 genomes]
rs11783860	1.00[AFR][1000 genomes]
rs11783940	1.00[AFR][1000 genomes]
rs11784477	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs11785125	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs11785172	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs11785286	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11786205	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11787251	1.00[AFR][1000 genomes]
rs11787505	1.00[AFR][1000 genomes]
rs4319146	1.00[AFR][1000 genomes]
rs4639572	1.00[AFR][1000 genomes]
rs6981861	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6982030	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6989965	1.00[AFR][1000 genomes]
rs6991549	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6992270	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs7003568	1.00[AFR][1000 genomes]
rs7006802	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72720387	1.00[AFR][1000 genomes]
rs72720390	1.00[AFR][1000 genomes]
rs72722303	1.00[AFR][1000 genomes]
rs72722310	1.00[AFR][1000 genomes]
rs72722316	1.00[AFR][1000 genomes]
rs72722318	1.00[AFR][1000 genomes]
rs72722323	1.00[AFR][1000 genomes]
rs72722325	1.00[AFR][1000 genomes]
rs72722339	1.00[AFR][1000 genomes]
rs72722344	1.00[AFR][1000 genomes]
rs72722347	1.00[AFR][1000 genomes]
rs72722349	1.00[AFR][1000 genomes]
rs72722355	1.00[AFR][1000 genomes]
rs72722360	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72722361	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72722363	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72722368	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72722372	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72722374	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72722375	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72722379	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72722380	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72722381	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72722384	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72722386	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72722388	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72722392	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72722393	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72722394	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72722396	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72722397	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72722399	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72724403	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72724407	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72724412	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs72724414	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs72724419	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs72724421	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs72724423	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs72724426	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs72724437	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs72724446	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs72724447	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs72724449	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs72724450	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs72724451	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs72724452	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs72724453	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs72724454	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs72724455	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs72724460	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs72724461	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs72724473	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs752716	1.00[AFR][1000 genomes]
rs7826256	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7836273	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs929990	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869334	chr8:131025093-131651487	Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv915580	chr8:131025093-131667578	Weak transcription Genic enhancers Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv465810	chr8:131039109-131331012	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
4	nsv612234	chr8:131039109-131331012	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
5	nsv533085	chr8:131042781-131755007	Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
6	nsv831461	chr8:131159819-131302900	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:112 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:131146600-131206000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr8:131147600-131199800	Weak transcription	Pancreas	Pancrea
3	chr8:131155200-131206800	Weak transcription	Psoas Muscle	Psoas
4	chr8:131171000-131208600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr8:131172200-131211600	Weak transcription	Rectal Smooth Muscle	rectum
6	chr8:131172600-131199800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr8:131172600-131206800	Weak transcription	Esophagus	oesophagus
8	chr8:131172800-131210800	Weak transcription	Duodenum Mucosa	Duodenum
9	chr8:131173600-131206600	Weak transcription	Dnd41	blood
10	chr8:131175400-131206000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr8:131179000-131208600	Weak transcription	Skeletal Muscle Female	skeletal muscle
12	chr8:131179200-131208600	Weak transcription	Fetal Brain Female	brain
13	chr8:131179400-131199800	Weak transcription	Lung	lung
14	chr8:131179600-131199800	Weak transcription	Spleen	Spleen
15	chr8:131179600-131218400	Weak transcription	Thymus	Thymus
16	chr8:131179800-131199200	Weak transcription	Skeletal Muscle Male	skeletal muscle
17	chr8:131179800-131205000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr8:131179800-131206800	Weak transcription	Fetal Thymus	thymus
19	chr8:131179800-131207800	Weak transcription	Brain Germinal Matrix	brain
20	chr8:131180000-131206000	Weak transcription	K562	blood
21	chr8:131180200-131207000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
22	chr8:131181000-131208600	Weak transcription	Right Ventricle	heart
23	chr8:131181000-131224600	Weak transcription	Hela-S3	cervix
24	chr8:131181200-131206000	Weak transcription	Primary T cells fromperipheralblood	blood
25	chr8:131181200-131229000	Weak transcription	Aorta	Aorta
26	chr8:131182000-131199400	Weak transcription	Liver	Liver
27	chr8:131184400-131206800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr8:131186000-131199200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
29	chr8:131186000-131206800	Weak transcription	Gastric	stomach
30	chr8:131187800-131209000	Weak transcription	Fetal Stomach	stomach
31	chr8:131188400-131206000	Weak transcription	HSMMtube	muscle
32	chr8:131189400-131203800	Weak transcription	HMEC	breast
33	chr8:131191400-131205800	Weak transcription	Placenta Amnion	Placenta Amnion
34	chr8:131191600-131206000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
35	chr8:131191800-131199000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
36	chr8:131191800-131206400	Weak transcription	HUES64 Cell Line	embryonic stem cell
37	chr8:131192600-131199600	Weak transcription	Primary B cells from peripheral blood	blood
38	chr8:131193200-131200000	Weak transcription	HepG2	liver
39	chr8:131193200-131206000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
40	chr8:131193400-131199600	Weak transcription	Fetal Muscle Trunk	muscle
41	chr8:131194000-131200200	Weak transcription	NHEK	skin
42	chr8:131194800-131199800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
43	chr8:131194800-131204200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
44	chr8:131195000-131199600	Weak transcription	Duodenum Smooth Muscle	Duodenum
45	chr8:131195000-131204800	Weak transcription	Ovary	ovary
46	chr8:131195000-131206000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
47	chr8:131195000-131206000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
48	chr8:131195000-131206000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
49	chr8:131195000-131206200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
50	chr8:131195000-131224200	Weak transcription	Stomach Smooth Muscle	stomach

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