Variant report

Variant	rs11774895
Chromosome Location	chr8:121602140-121602141
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10098051	0.86[EUR][1000 genomes]
rs10216544	0.85[EUR][1000 genomes]
rs10955977	0.90[ASN][1000 genomes]
rs11782035	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11782950	0.91[CEU][hapmap];0.81[CHB][hapmap];0.88[ASN][1000 genomes]
rs11786460	0.88[CEU][hapmap];0.88[CHB][hapmap];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11786755	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11992085	0.88[CEU][hapmap];0.82[CHB][hapmap];0.90[ASN][1000 genomes]
rs11993763	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13248824	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs13249701	0.91[CEU][hapmap];0.87[CHB][hapmap];0.83[JPT][hapmap];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13251609	0.86[CEU][hapmap];0.88[CHB][hapmap];0.86[JPT][hapmap];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13253450	0.88[CEU][hapmap];0.83[CHB][hapmap];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs13254959	0.91[CEU][hapmap];0.81[CHB][hapmap];0.86[JPT][hapmap];0.91[ASN][1000 genomes]
rs13261532	0.86[ASN][1000 genomes]
rs13263202	0.88[ASN][1000 genomes]
rs13265960	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13271651	0.91[ASN][1000 genomes]
rs13273020	0.87[ASN][1000 genomes]
rs13277867	0.88[ASN][1000 genomes]
rs13278351	0.90[ASN][1000 genomes]
rs35721503	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4314683	0.91[CEU][hapmap];0.81[CHB][hapmap];0.86[JPT][hapmap];0.91[ASN][1000 genomes]
rs4387016	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4455882	0.88[CEU][hapmap];0.87[CHB][hapmap];0.86[JPT][hapmap];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4515597	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4562365	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4582605	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4644306	0.88[CEU][hapmap];0.86[JPT][hapmap];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs55885222	0.91[ASN][1000 genomes]
rs6469937	0.91[CEU][hapmap];0.87[CHB][hapmap];0.86[JPT][hapmap];0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6984991	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6988919	0.88[CEU][hapmap];0.83[CHB][hapmap];0.88[ASN][1000 genomes]
rs6999061	0.85[EUR][1000 genomes]
rs7820041	0.88[CEU][hapmap];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7827513	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7846519	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891421	chr8:121292407-121653902	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv1021757	chr8:121501179-121620441	Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
3	nsv539740	chr8:121501179-121620441	Strong transcription Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:60 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:121587200-121623000	Weak transcription	Fetal Intestine Small	intestine
2	chr8:121587800-121609200	Weak transcription	Fetal Stomach	stomach
3	chr8:121587800-121611000	Weak transcription	Primary T helper cells fromperipheralblood	blood
4	chr8:121587800-121640600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chr8:121588200-121642400	Weak transcription	Primary T cells fromperipheralblood	blood
6	chr8:121588400-121610000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
7	chr8:121588600-121636600	Weak transcription	Primary B cells from cord blood	blood
8	chr8:121589600-121602200	Weak transcription	Primary T cells from cord blood	blood
9	chr8:121594200-121605400	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr8:121596800-121602400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr8:121596800-121604400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr8:121596800-121606200	Enhancers	NHLF	lung
13	chr8:121596800-121606400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr8:121597000-121605000	Enhancers	HSMMtube	muscle
15	chr8:121597600-121602800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr8:121597800-121613200	Weak transcription	Fetal Muscle Trunk	muscle
17	chr8:121598400-121604800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr8:121598600-121603600	Weak transcription	Monocytes-CD14+_RO01746	blood
19	chr8:121598600-121611000	Weak transcription	Primary monocytes fromperipheralblood	blood
20	chr8:121598800-121605000	Weak transcription	Lung	lung
21	chr8:121599000-121604800	Weak transcription	Pancreas	Pancrea
22	chr8:121599000-121605400	Weak transcription	Left Ventricle	heart
23	chr8:121599000-121615800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
24	chr8:121599600-121606200	Enhancers	NHDF-Ad	bronchial
25	chr8:121600000-121605000	Enhancers	HSMM	muscle
26	chr8:121600000-121605400	Weak transcription	Psoas Muscle	Psoas
27	chr8:121600200-121605000	Enhancers	Muscle Satellite Cultured Cells	--
28	chr8:121600400-121602800	Enhancers	Fetal Kidney	kidney
29	chr8:121600600-121602800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr8:121600600-121604000	Enhancers	Skeletal Muscle Female	skeletal muscle
31	chr8:121600600-121609200	Weak transcription	Primary hematopoietic stem cells	blood
32	chr8:121600800-121602200	Enhancers	Rectal Mucosa Donor 31	rectum
33	chr8:121600800-121605600	Strong transcription	HepG2	liver
34	chr8:121601000-121602800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr8:121601000-121602800	Enhancers	Liver	Liver
36	chr8:121601000-121603000	Enhancers	Osteobl	bone
37	chr8:121601200-121602800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
38	chr8:121601200-121604400	Enhancers	iPS-20b Cell Line	embryonic stem cell
39	chr8:121601200-121606400	Enhancers	Fetal Muscle Leg	muscle
40	chr8:121601200-121623200	Weak transcription	Primary T helper cells PMA-I stimulated	--
41	chr8:121601400-121605000	Weak transcription	Colon Smooth Muscle	Colon
42	chr8:121601600-121602400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr8:121601600-121602800	Enhancers	ES-I3 Cell Line	embryonic stem cell
44	chr8:121601600-121603000	Enhancers	Fetal Lung	lung
45	chr8:121601800-121602600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
46	chr8:121601800-121602600	Enhancers	Hela-S3	cervix
47	chr8:121601800-121602800	Enhancers	iPS-18 Cell Line	embryonic stem cell
48	chr8:121601800-121602800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
49	chr8:121601800-121602800	Enhancers	NH-A	brain
50	chr8:121601800-121603000	Enhancers	H1 Cell Line	embryonic stem cell

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