Variant report

Variant	rs7846519
Chromosome Location	chr8:121607674-121607675
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10955977	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11774895	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11782035	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11782950	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11786460	0.85[AMR][1000 genomes]
rs11786755	0.83[AMR][1000 genomes]
rs11992085	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11993763	0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13249701	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13251609	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13253450	0.84[AMR][1000 genomes]
rs13254959	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13261532	0.86[ASN][1000 genomes]
rs13263202	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13265960	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13271651	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13273020	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13277867	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13278351	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35721503	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4314683	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4387016	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4455882	0.85[AMR][1000 genomes]
rs4515597	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4562365	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4582605	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4644306	0.84[AMR][1000 genomes]
rs55885222	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6469937	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6984991	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6988919	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7820041	0.81[AMR][1000 genomes]
rs7827513	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891421	chr8:121292407-121653902	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv1021757	chr8:121501179-121620441	Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
3	nsv539740	chr8:121501179-121620441	Strong transcription Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:121587200-121623000	Weak transcription	Fetal Intestine Small	intestine
2	chr8:121587800-121609200	Weak transcription	Fetal Stomach	stomach
3	chr8:121587800-121611000	Weak transcription	Primary T helper cells fromperipheralblood	blood
4	chr8:121587800-121640600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chr8:121588200-121642400	Weak transcription	Primary T cells fromperipheralblood	blood
6	chr8:121588400-121610000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
7	chr8:121588600-121636600	Weak transcription	Primary B cells from cord blood	blood
8	chr8:121597800-121613200	Weak transcription	Fetal Muscle Trunk	muscle
9	chr8:121598600-121611000	Weak transcription	Primary monocytes fromperipheralblood	blood
10	chr8:121599000-121615800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
11	chr8:121600600-121609200	Weak transcription	Primary hematopoietic stem cells	blood
12	chr8:121601200-121623200	Weak transcription	Primary T helper cells PMA-I stimulated	--
13	chr8:121602000-121627600	Weak transcription	Aorta	Aorta
14	chr8:121602400-121609200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr8:121602800-121609400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr8:121603200-121626400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
17	chr8:121604200-121608800	Weak transcription	Monocytes-CD14+_RO01746	blood
18	chr8:121605600-121608400	Weak transcription	HepG2	liver
19	chr8:121605600-121610200	Weak transcription	NH-A	brain
20	chr8:121605800-121608600	Weak transcription	Liver	Liver
21	chr8:121605800-121609600	Weak transcription	Osteobl	bone
22	chr8:121605800-121610600	Weak transcription	Pancreas	Pancrea
23	chr8:121605800-121644400	Weak transcription	Gastric	stomach
24	chr8:121606200-121609200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr8:121606200-121609200	Weak transcription	Cortex derived primary cultured neurospheres	brain
26	chr8:121606200-121609400	Weak transcription	NHDF-Ad	bronchial
27	chr8:121606200-121609600	Weak transcription	Muscle Satellite Cultured Cells	--
28	chr8:121606200-121609600	Weak transcription	HSMM	muscle
29	chr8:121606200-121609600	Weak transcription	NHLF	lung
30	chr8:121606200-121609800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr8:121606200-121626200	Weak transcription	HSMMtube	muscle
32	chr8:121606400-121608800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
33	chr8:121606400-121609200	Weak transcription	Fetal Muscle Leg	muscle
34	chr8:121606400-121612800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
35	chr8:121606800-121609400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr8:121606800-121610600	Strong transcription	Primary T cells from cord blood	blood
37	chr8:121607000-121609800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
38	chr8:121607400-121623200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
39	chr8:121607600-121643000	Weak transcription	Fetal Intestine Large	intestine

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