Variant report

Variant	rs11775284
Chromosome Location	chr8:130204969-130204970
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10956466	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11774600	0.90[EUR][1000 genomes]
rs12543255	0.83[ASN][1000 genomes]
rs13280541	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4344040	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4604396	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6998274	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7001729	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72609879	0.94[ASN][1000 genomes]
rs7814298	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7816117	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs8180979	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9650102	0.94[ASN][1000 genomes]
rs9772218	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891443	chr8:130016499-130220746	Weak transcription Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv891445	chr8:130152109-130224721	Enhancers ZNF genes & repeats Genic enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv831460	chr8:130185680-130366217	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:130195600-130207600	Weak transcription	Fetal Thymus	thymus
2	chr8:130195800-130208000	Weak transcription	Thymus	Thymus
3	chr8:130196800-130208600	Genic enhancers	Dnd41	blood
4	chr8:130199800-130205200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr8:130200200-130205200	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr8:130200200-130205400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr8:130203000-130205200	Weak transcription	Pancreas	Pancrea

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links