Variant report

Variant	rs13280541
Chromosome Location	chr8:130219646-130219647
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10956469	0.81[ASN][1000 genomes]
rs11774600	0.90[AMR][1000 genomes]
rs11775284	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11785372	0.85[ASN][1000 genomes]
rs11786094	0.88[ASN][1000 genomes]
rs11993499	0.88[ASN][1000 genomes]
rs11993548	0.88[ASN][1000 genomes]
rs12155839	0.89[EUR][1000 genomes]
rs12679073	0.86[ASN][1000 genomes]
rs13280665	0.91[ASN][1000 genomes]
rs13282710	0.91[ASN][1000 genomes]
rs34135744	0.91[ASN][1000 genomes]
rs34259154	0.91[ASN][1000 genomes]
rs34328462	0.91[ASN][1000 genomes]
rs34398151	0.91[ASN][1000 genomes]
rs34574758	0.91[ASN][1000 genomes]
rs34744355	0.91[ASN][1000 genomes]
rs35043542	0.91[ASN][1000 genomes]
rs35168381	0.91[ASN][1000 genomes]
rs4370497	0.87[ASN][1000 genomes]
rs4377927	0.88[ASN][1000 genomes]
rs4463383	0.91[ASN][1000 genomes]
rs4476975	0.87[ASN][1000 genomes]
rs4531013	0.86[ASN][1000 genomes]
rs4585711	0.91[ASN][1000 genomes]
rs4613964	0.91[ASN][1000 genomes]
rs4637785	0.88[ASN][1000 genomes]
rs5003702	0.85[ASN][1000 genomes]
rs5003703	0.85[ASN][1000 genomes]
rs6986688	0.91[ASN][1000 genomes]
rs6998274	0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7001729	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7013028	0.88[ASN][1000 genomes]
rs72609879	0.89[ASN][1000 genomes]
rs7814298	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7816117	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7819161	0.91[ASN][1000 genomes]
rs7819443	0.91[ASN][1000 genomes]
rs7822833	0.91[ASN][1000 genomes]
rs7837664	0.91[ASN][1000 genomes]
rs9650102	0.89[ASN][1000 genomes]
rs9772218	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891443	chr8:130016499-130220746	Weak transcription Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv891445	chr8:130152109-130224721	Enhancers ZNF genes & repeats Genic enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv831460	chr8:130185680-130366217	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv612229	chr8:130213203-130252229	Weak transcription Enhancers Genic enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:130208200-130241600	Weak transcription	Thymus	Thymus
2	chr8:130215200-130227000	Weak transcription	Fetal Thymus	thymus
3	chr8:130217600-130222200	Genic enhancers	Dnd41	blood

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