Variant report

Variant	rs11775962
Chromosome Location	chr8:120501542-120501543
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 93 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:90)

rs_ID	r²[population]
rs10086941	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10087213	0.89[EUR][1000 genomes]
rs10087316	0.89[EUR][1000 genomes]
rs10087415	0.89[EUR][1000 genomes]
rs10093203	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs10095019	0.88[EUR][1000 genomes]
rs10095956	0.89[EUR][1000 genomes]
rs10105471	0.88[EUR][1000 genomes]
rs10107512	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10112143	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10505364	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1080040	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs11774319	0.89[EUR][1000 genomes]
rs11777943	0.89[EUR][1000 genomes]
rs11784751	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11786546	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12544624	0.88[EUR][1000 genomes]
rs1599475	0.88[EUR][1000 genomes]
rs17190725	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17793468	0.90[EUR][1000 genomes]
rs17793498	0.90[EUR][1000 genomes]
rs17793803	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17794271	0.89[EUR][1000 genomes]
rs1841616	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs1992722	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1992723	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1992724	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2326260	0.89[EUR][1000 genomes]
rs2326261	0.89[EUR][1000 genomes]
rs2326262	0.89[EUR][1000 genomes]
rs2326263	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28575764	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs28612171	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs28673148	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4292719	0.89[EUR][1000 genomes]
rs4870796	0.89[EUR][1000 genomes]
rs4870797	0.89[EUR][1000 genomes]
rs4870798	0.89[EUR][1000 genomes]
rs4870800	0.84[EUR][1000 genomes]
rs4871265	0.89[EUR][1000 genomes]
rs4871266	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4871279	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6469828	1.00[CEU][hapmap];0.86[JPT][hapmap];0.95[YRI][hapmap];0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6980719	1.00[CEU][hapmap];0.81[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6982983	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6982993	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6983616	0.88[EUR][1000 genomes]
rs6991181	0.88[EUR][1000 genomes]
rs6996111	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6996588	0.89[EUR][1000 genomes]
rs7000133	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7000655	0.95[CEU][hapmap];0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7000665	0.86[EUR][1000 genomes]
rs7003326	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7003949	0.88[EUR][1000 genomes]
rs7005633	0.89[EUR][1000 genomes]
rs7009369	0.89[EUR][1000 genomes]
rs7009858	0.89[EUR][1000 genomes]
rs7010158	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7013085	0.88[EUR][1000 genomes]
rs7013099	0.88[EUR][1000 genomes]
rs7013103	0.88[EUR][1000 genomes]
rs7013650	0.88[EUR][1000 genomes]
rs7013726	0.90[EUR][1000 genomes]
rs7013970	0.90[EUR][1000 genomes]
rs7014095	0.90[EUR][1000 genomes]
rs7014564	0.90[EUR][1000 genomes]
rs7016811	0.88[EUR][1000 genomes]
rs7017947	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72686368	0.88[EUR][1000 genomes]
rs72686373	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72686376	0.89[EUR][1000 genomes]
rs73713855	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7813722	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7816665	0.88[EUR][1000 genomes]
rs7825776	1.00[CEU][hapmap];0.81[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7827684	0.87[EUR][1000 genomes]
rs7830059	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7830192	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7832928	0.88[EUR][1000 genomes]
rs7841822	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7845239	1.00[CEU][hapmap];0.81[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7845412	1.00[CEU][hapmap];0.81[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7845494	1.00[CEU][hapmap];0.81[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7845613	1.00[CEU][hapmap];0.81[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7845757	0.87[EUR][1000 genomes]
rs7846200	1.00[CEU][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7846334	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9297598	0.88[EUR][1000 genomes]
rs9643134	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv868916	chr8:119911943-120762250	Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Enhancers Genic enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv1026655	chr8:120282929-120522329	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
3	nsv534028	chr8:120348940-120906079	Flanking Active TSS Strong transcription Weak transcription Active TSS Enhancers ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:120499600-120502600	Weak transcription	Fetal Brain Male	brain
2	chr8:120501400-120502600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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