Variant report

Variant	rs28673148
Chromosome Location	chr8:120511743-120511744
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 118 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:114)

rs_ID	r²[population]
rs10086941	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10087213	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10087316	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10087415	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10090542	0.80[EUR][1000 genomes]
rs10094917	0.85[EUR][1000 genomes]
rs10095019	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10095956	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10102546	0.80[EUR][1000 genomes]
rs10105471	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10107512	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10112143	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10505364	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10955931	0.81[EUR][1000 genomes]
rs11774319	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11775962	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11777943	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11782176	0.81[EUR][1000 genomes]
rs11784751	0.84[EUR][1000 genomes]
rs11786546	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11987056	0.81[EUR][1000 genomes]
rs12544624	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1348724	0.85[EUR][1000 genomes]
rs1348725	0.85[EUR][1000 genomes]
rs1374098	0.81[EUR][1000 genomes]
rs1446070	0.81[EUR][1000 genomes]
rs1446071	0.81[EUR][1000 genomes]
rs1446072	0.81[EUR][1000 genomes]
rs17190725	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17793468	0.82[EUR][1000 genomes]
rs17793498	0.82[EUR][1000 genomes]
rs17793803	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17794271	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1838746	0.85[EUR][1000 genomes]
rs1867743	0.81[EUR][1000 genomes]
rs1992722	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1992723	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1992724	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2017336	0.84[EUR][1000 genomes]
rs2326260	0.81[EUR][1000 genomes]
rs2326261	0.81[EUR][1000 genomes]
rs2326262	0.81[EUR][1000 genomes]
rs2326263	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs28575764	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs28612171	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2875886	0.86[EUR][1000 genomes]
rs2875887	0.85[EUR][1000 genomes]
rs4292719	0.81[EUR][1000 genomes]
rs4549811	0.85[EUR][1000 genomes]
rs4870796	0.81[EUR][1000 genomes]
rs4870797	0.81[EUR][1000 genomes]
rs4870798	0.81[EUR][1000 genomes]
rs4870800	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4870833	0.81[EUR][1000 genomes]
rs4871265	0.81[EUR][1000 genomes]
rs4871266	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4871279	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4871324	0.81[EUR][1000 genomes]
rs4871333	0.81[EUR][1000 genomes]
rs4871334	0.81[EUR][1000 genomes]
rs4871336	0.81[EUR][1000 genomes]
rs6469828	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6980719	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6982983	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6982993	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6983616	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6987543	0.81[EUR][1000 genomes]
rs6993464	0.81[EUR][1000 genomes]
rs6996111	0.87[EUR][1000 genomes]
rs6996588	0.81[EUR][1000 genomes]
rs6999626	0.81[EUR][1000 genomes]
rs7000133	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7000655	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7000665	0.84[EUR][1000 genomes]
rs7003326	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7003949	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7005633	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7009369	0.81[EUR][1000 genomes]
rs7009858	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7010158	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7013085	0.80[EUR][1000 genomes]
rs7013099	0.80[EUR][1000 genomes]
rs7013103	0.80[EUR][1000 genomes]
rs7013650	0.80[EUR][1000 genomes]
rs7013726	0.82[EUR][1000 genomes]
rs7013970	0.82[EUR][1000 genomes]
rs7014095	0.82[EUR][1000 genomes]
rs7014564	0.82[EUR][1000 genomes]
rs7016637	0.85[EUR][1000 genomes]
rs7016811	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7017947	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72686368	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72686373	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72686376	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73713855	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7813722	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7815000	0.84[EUR][1000 genomes]
rs7816665	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7825776	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7830059	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7830192	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7832928	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7838891	0.81[EUR][1000 genomes]
rs7841822	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7845239	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7845412	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7845494	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7845613	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7845757	0.84[EUR][1000 genomes]
rs7846200	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7846334	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs895384	0.81[EUR][1000 genomes]
rs895385	0.81[EUR][1000 genomes]
rs9297598	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv868916	chr8:119911943-120762250	Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Enhancers Genic enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv1026655	chr8:120282929-120522329	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
3	nsv534028	chr8:120348940-120906079	Flanking Active TSS Strong transcription Weak transcription Active TSS Enhancers ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
4	esv3398634	chr8:120509296-120512444	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:120511600-120512200	Enhancers	Skeletal Muscle Female	skeletal muscle
2	chr8:120511600-120513000	Enhancers	Fetal Muscle Leg	muscle

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