Variant report

Variant	rs7815000
Chromosome Location	chr8:120543124-120543125
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 77 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:75)

rs_ID	r²[population]
rs10086941	0.85[EUR][1000 genomes]
rs10087213	0.85[EUR][1000 genomes]
rs10087316	0.85[EUR][1000 genomes]
rs10087415	0.85[EUR][1000 genomes]
rs10090542	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10095019	0.86[EUR][1000 genomes]
rs10095956	0.85[EUR][1000 genomes]
rs10102546	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10105471	0.86[EUR][1000 genomes]
rs10107512	0.85[EUR][1000 genomes]
rs10112143	0.85[EUR][1000 genomes]
rs10505364	0.82[EUR][1000 genomes]
rs10955931	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11774319	0.85[EUR][1000 genomes]
rs11777943	0.84[EUR][1000 genomes]
rs11782176	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11987056	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12544624	0.86[EUR][1000 genomes]
rs1374098	0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1446070	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1446071	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1446072	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17190725	0.85[EUR][1000 genomes]
rs17793803	0.82[EUR][1000 genomes]
rs17794271	0.85[EUR][1000 genomes]
rs1867743	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1992722	0.85[EUR][1000 genomes]
rs1992723	0.84[EUR][1000 genomes]
rs1992724	0.84[EUR][1000 genomes]
rs28575764	0.85[EUR][1000 genomes]
rs28612171	0.85[EUR][1000 genomes]
rs28673148	0.84[EUR][1000 genomes]
rs4870833	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4871279	0.81[EUR][1000 genomes]
rs4871324	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4871333	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4871334	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4871336	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4871337	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6469828	0.82[EUR][1000 genomes]
rs6980719	0.82[EUR][1000 genomes]
rs6982983	0.84[EUR][1000 genomes]
rs6982993	0.84[EUR][1000 genomes]
rs6983616	0.80[EUR][1000 genomes]
rs6987543	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6993464	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6999626	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7000655	0.80[EUR][1000 genomes]
rs7003326	0.84[EUR][1000 genomes]
rs7003949	0.80[EUR][1000 genomes]
rs7005633	0.84[EUR][1000 genomes]
rs7009858	0.85[EUR][1000 genomes]
rs7010158	0.82[EUR][1000 genomes]
rs7016811	0.86[EUR][1000 genomes]
rs72686368	0.80[EUR][1000 genomes]
rs72686373	0.85[EUR][1000 genomes]
rs72686376	0.85[EUR][1000 genomes]
rs73713855	0.85[EUR][1000 genomes]
rs7813722	0.85[EUR][1000 genomes]
rs7816665	0.86[EUR][1000 genomes]
rs7825776	0.81[EUR][1000 genomes]
rs7830059	0.85[EUR][1000 genomes]
rs7830192	0.85[EUR][1000 genomes]
rs7832928	0.86[EUR][1000 genomes]
rs7838891	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7841822	0.81[EUR][1000 genomes]
rs7845239	0.81[EUR][1000 genomes]
rs7845412	0.81[EUR][1000 genomes]
rs7845494	0.81[EUR][1000 genomes]
rs7845613	0.81[EUR][1000 genomes]
rs7846200	0.81[EUR][1000 genomes]
rs7846334	0.81[EUR][1000 genomes]
rs895384	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs895385	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9297598	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv868916	chr8:119911943-120762250	Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Enhancers Genic enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv534028	chr8:120348940-120906079	Flanking Active TSS Strong transcription Weak transcription Active TSS Enhancers ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:120543000-120547000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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