Variant report

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs11778778	0.84[ASN][1000 genomes]
rs11781130	0.84[ASN][1000 genomes]
rs11781698	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11786027	0.84[ASN][1000 genomes]
rs11989221	0.84[ASN][1000 genomes]
rs11994578	0.87[ASN][1000 genomes]
rs12156130	1.00[AFR][1000 genomes]
rs12675851	0.84[ASN][1000 genomes]
rs12678944	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12680935	0.84[ASN][1000 genomes]
rs34162236	0.84[ASN][1000 genomes]
rs35511242	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs35761432	0.87[ASN][1000 genomes]
rs35895310	0.97[ASN][1000 genomes]
rs4870728	0.97[ASN][1000 genomes]
rs4870730	1.00[CHB][hapmap];0.87[ASN][1000 genomes]
rs55695515	0.85[ASN][1000 genomes]
rs57481340	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs59967069	0.84[ASN][1000 genomes]
rs6469931	1.00[CHB][hapmap];0.84[ASN][1000 genomes]
rs6991936	1.00[CHB][hapmap];0.84[ASN][1000 genomes]
rs7004427	0.84[ASN][1000 genomes]
rs7006059	0.84[ASN][1000 genomes]
rs7006363	1.00[CHB][hapmap];0.84[ASN][1000 genomes]
rs7016084	1.00[CHB][hapmap]
rs7821312	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs7825296	1.00[CHB][hapmap];0.85[ASN][1000 genomes]
rs7826746	1.00[CHB][hapmap];0.85[ASN][1000 genomes]
rs7835199	0.97[ASN][1000 genomes]
rs7839548	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891420	chr8:121194900-121561369	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv612112	chr8:121234298-121385167	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv891421	chr8:121292407-121653902	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
4	nsv1033386	chr8:121369943-121501239	Flanking Active TSS Strong transcription Active TSS Enhancers Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:121369600-121406200	Weak transcription	Left Ventricle	heart
2	chr8:121376400-121391000	Weak transcription	Ovary	ovary
3	chr8:121378800-121392000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr8:121379200-121390600	Weak transcription	Colon Smooth Muscle	Colon
5	chr8:121379600-121385000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
6	chr8:121381800-121385200	Weak transcription	Fetal Lung	lung
7	chr8:121381800-121385200	Weak transcription	Fetal Stomach	stomach
8	chr8:121382400-121385200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr8:121382800-121395400	Weak transcription	Aorta	Aorta
10	chr8:121384000-121385800	Weak transcription	Fetal Heart	heart
11	chr8:121384400-121385600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr8:121384400-121386000	Enhancers	Hela-S3	cervix
13	chr8:121384400-121386400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr8:121384400-121386400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr8:121384400-121387000	Enhancers	NHLF	lung
16	chr8:121384600-121386200	Enhancers	NHDF-Ad	bronchial
17	chr8:121384600-121386400	Enhancers	Muscle Satellite Cultured Cells	--
18	chr8:121384800-121386000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr8:121384800-121386200	Enhancers	Osteobl	bone
20	chr8:121384800-121387000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung

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