Variant report

Variant	rs7825296
Chromosome Location	chr8:121435930-121435931
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:121420399..121421994-chr8:121434767..121437184,2	K562	blood:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs11776121	0.85[ASN][1000 genomes]
rs11778778	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11781130	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11781698	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs11786027	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11989221	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11994578	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12675851	0.98[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12678944	0.96[ASN][1000 genomes]
rs12680935	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34162236	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35511242	0.97[ASN][1000 genomes]
rs35761432	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35895310	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4870728	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4870730	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs55695515	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57481340	0.99[ASN][1000 genomes]
rs59967069	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6469931	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6991936	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7004427	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7006059	0.98[ASN][1000 genomes]
rs7006363	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs7016084	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7821312	1.00[CHB][hapmap];1.00[YRI][hapmap];0.87[ASN][1000 genomes]
rs7826746	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7835199	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7839548	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891420	chr8:121194900-121561369	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv891421	chr8:121292407-121653902	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv1033386	chr8:121369943-121501239	Flanking Active TSS Strong transcription Active TSS Enhancers Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
4	esv996748	chr8:121433689-121442089	Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:121402000-121456400	Weak transcription	Small Intestine	intestine
2	chr8:121404400-121454400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
3	chr8:121404600-121456000	Weak transcription	Colonic Mucosa	Colon
4	chr8:121405000-121456000	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr8:121405600-121455600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
6	chr8:121407800-121442800	Weak transcription	NHEK	skin
7	chr8:121408200-121450400	Weak transcription	Psoas Muscle	Psoas
8	chr8:121408400-121442800	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr8:121409800-121446200	Weak transcription	Right Ventricle	heart
10	chr8:121410200-121456400	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr8:121410200-121456600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr8:121410600-121456600	Weak transcription	Gastric	stomach
13	chr8:121410600-121456600	Weak transcription	Spleen	Spleen
14	chr8:121411000-121443600	Weak transcription	Brain Inferior Temporal Lobe	brain
15	chr8:121411000-121456000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
16	chr8:121412600-121450400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
17	chr8:121412800-121456000	Weak transcription	Fetal Brain Male	brain
18	chr8:121413600-121454800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
19	chr8:121415800-121436600	Weak transcription	Fetal Muscle Leg	muscle
20	chr8:121415800-121443400	Weak transcription	Brain Germinal Matrix	brain
21	chr8:121415800-121450200	Weak transcription	Pancreas	Pancrea
22	chr8:121415800-121452200	Weak transcription	Fetal Brain Female	brain
23	chr8:121415800-121456400	Weak transcription	Esophagus	oesophagus
24	chr8:121417000-121455800	Weak transcription	NHLF	lung
25	chr8:121417000-121456000	Weak transcription	Brain Substantia Nigra	brain
26	chr8:121417000-121456400	Weak transcription	Fetal Kidney	kidney
27	chr8:121417200-121450400	Weak transcription	Sigmoid Colon	Sigmoid Colon
28	chr8:121417200-121456000	Weak transcription	Brain Hippocampus Middle	brain
29	chr8:121417200-121456000	Weak transcription	Rectal Smooth Muscle	rectum
30	chr8:121417400-121454200	Weak transcription	HSMMtube	muscle
31	chr8:121417400-121455800	Weak transcription	Aorta	Aorta
32	chr8:121417400-121455800	Weak transcription	Colon Smooth Muscle	Colon
33	chr8:121417800-121440200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
34	chr8:121417800-121440800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
35	chr8:121417800-121450200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
36	chr8:121417800-121451000	Weak transcription	Stomach Smooth Muscle	stomach
37	chr8:121417800-121456400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr8:121418000-121441000	Weak transcription	Fetal Lung	lung
39	chr8:121418000-121450400	Weak transcription	A549	lung
40	chr8:121423600-121450400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
41	chr8:121423600-121455800	Weak transcription	Thymus	Thymus
42	chr8:121423600-121456000	Weak transcription	Fetal Intestine Small	intestine
43	chr8:121423600-121456000	Weak transcription	Ovary	ovary
44	chr8:121423600-121456400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
45	chr8:121423600-121456400	Weak transcription	Lung	lung
46	chr8:121423800-121456000	Weak transcription	Fetal Stomach	stomach
47	chr8:121424000-121442400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
48	chr8:121424800-121456000	Weak transcription	Brain Anterior Caudate	brain
49	chr8:121425000-121441200	Weak transcription	Primary T cells from cord blood	blood
50	chr8:121425000-121448400	Weak transcription	Cortex derived primary cultured neurospheres	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links