Variant report

Variant	rs11776292
Chromosome Location	chr8:118896567-118896568
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:118896207..118897097-chr8:119132804..119133487,2	MCF-7	breast:
2	chr8:118895392..118899100-chr8:119122968..119125162,4	MCF-7	breast:
3	chr8:118894308..118897199-chr8:119123485..119125285,2	MCF-7	breast:
4	chr8:118896198..118897114-chr8:119037614..119038165,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000182197	Chromatin interaction

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10106675	0.87[CHB][hapmap];0.80[ASN][1000 genomes]
rs11774623	0.87[CHB][hapmap];0.80[ASN][1000 genomes]
rs11777874	0.87[CHB][hapmap];0.82[ASN][1000 genomes]
rs11781153	0.81[CHB][hapmap]
rs11781245	0.82[CHB][hapmap]
rs11784409	0.87[CHB][hapmap];0.81[ASN][1000 genomes]
rs11784466	0.87[CHB][hapmap];0.81[ASN][1000 genomes]
rs11785986	0.83[CEU][hapmap];0.95[CHB][hapmap];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11986974	0.84[CEU][hapmap];0.91[CHB][hapmap];0.81[JPT][hapmap];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12549331	0.81[JPT][hapmap]
rs12678309	0.84[CEU][hapmap];0.91[CHB][hapmap];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12682332	0.87[CHB][hapmap];0.81[ASN][1000 genomes]
rs12682480	0.83[CEU][hapmap];0.96[CHB][hapmap];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17430540	0.87[CHB][hapmap];0.80[ASN][1000 genomes]
rs17430610	0.82[CHB][hapmap]
rs17450723	0.83[CEU][hapmap];0.96[CHB][hapmap];0.82[JPT][hapmap];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17450758	0.83[CEU][hapmap];0.95[CHB][hapmap];0.82[JPT][hapmap];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17450835	0.91[CHB][hapmap];0.81[ASN][1000 genomes]
rs17450856	0.80[ASN][1000 genomes]
rs17450863	0.87[CHB][hapmap];0.80[ASN][1000 genomes]
rs17450876	0.87[CHB][hapmap];0.80[ASN][1000 genomes]
rs17452966	0.87[CHB][hapmap];0.80[ASN][1000 genomes]
rs17453043	0.82[CHB][hapmap]
rs17475190	0.91[CHB][hapmap];0.82[ASN][1000 genomes]
rs17503934	0.84[CEU][hapmap];0.91[CHB][hapmap];0.82[JPT][hapmap];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs28357271	0.87[CHB][hapmap];0.80[ASN][1000 genomes]
rs28357275	0.87[CHB][hapmap];0.81[ASN][1000 genomes]
rs28357276	0.82[CHB][hapmap];0.80[ASN][1000 genomes]
rs28357277	0.82[CHB][hapmap];0.80[ASN][1000 genomes]
rs4391466	0.82[CHB][hapmap];0.81[JPT][hapmap]
rs4602926	0.87[CHB][hapmap]
rs5005135	0.82[CHB][hapmap];0.80[ASN][1000 genomes]
rs57075571	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62521140	0.81[ASN][1000 genomes]
rs6469716	0.82[CHB][hapmap];0.80[ASN][1000 genomes]
rs6982505	0.80[ASN][1000 genomes]
rs6985552	0.87[CHB][hapmap];0.81[ASN][1000 genomes]
rs6999044	0.87[CHB][hapmap];0.82[JPT][hapmap];0.82[ASN][1000 genomes]
rs7007735	0.91[CHB][hapmap];0.82[ASN][1000 genomes]
rs7012890	0.87[CHB][hapmap];0.81[ASN][1000 genomes]
rs73320194	0.81[EUR][1000 genomes]
rs7820452	0.87[CHB][hapmap];0.80[ASN][1000 genomes]
rs7822297	0.87[CHB][hapmap];0.80[ASN][1000 genomes]
rs7824327	0.82[CHB][hapmap];0.82[JPT][hapmap];0.80[ASN][1000 genomes]
rs7824391	0.80[ASN][1000 genomes]
rs7824395	0.82[CHB][hapmap];0.82[JPT][hapmap];0.80[ASN][1000 genomes]
rs7830840	0.84[CEU][hapmap];0.91[CHB][hapmap];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7836747	0.81[ASN][1000 genomes]
rs7842917	0.82[CHB][hapmap];0.82[JPT][hapmap];0.80[ASN][1000 genomes]
rs7843515	0.81[CHB][hapmap];0.80[JPT][hapmap];0.80[ASN][1000 genomes]
rs9656923	0.87[CHB][hapmap];0.82[JPT][hapmap];0.82[ASN][1000 genomes]
rs9656925	0.87[CHB][hapmap];0.82[JPT][hapmap];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019636	chr8:118598433-118946091	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv539734	chr8:118598433-118946091	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv831439	chr8:118747352-118899118	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv933516	chr8:118764605-119009093	Weak transcription Enhancers Genic enhancers Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv1030459	chr8:118840179-119155835	Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
6	nsv831440	chr8:118871930-119052269	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv891411	chr8:118891896-118942698	Weak transcription Genic enhancers Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:62 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:118876200-118904400	Weak transcription	Right Ventricle	heart
2	chr8:118881200-118907600	Weak transcription	Duodenum Mucosa	Duodenum
3	chr8:118881400-118904600	Weak transcription	Lung	lung
4	chr8:118881400-118917400	Weak transcription	Esophagus	oesophagus
5	chr8:118888200-118908600	Weak transcription	Rectal Smooth Muscle	rectum
6	chr8:118889800-118904200	Weak transcription	Left Ventricle	heart
7	chr8:118890000-118914600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr8:118891200-118910400	Weak transcription	Psoas Muscle	Psoas
9	chr8:118892600-118898600	Weak transcription	Small Intestine	intestine
10	chr8:118893200-118897200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr8:118894000-118897000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
12	chr8:118894200-118896800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
13	chr8:118894200-118896800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr8:118894200-118898000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr8:118894200-118901200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
16	chr8:118894200-118901200	Weak transcription	Duodenum Smooth Muscle	Duodenum
17	chr8:118894200-118904400	Weak transcription	H9 Cell Line	embryonic stem cell
18	chr8:118894400-118896800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr8:118894600-118905000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr8:118894600-118912200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr8:118894800-118898600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr8:118894800-118900600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr8:118894800-118904200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr8:118894800-118904400	Weak transcription	NH-A	brain
25	chr8:118894800-118905200	Weak transcription	Muscle Satellite Cultured Cells	--
26	chr8:118894800-118905600	Weak transcription	HMEC	breast
27	chr8:118895400-118896800	Enhancers	Fetal Lung	lung
28	chr8:118895400-118897000	Enhancers	Fetal Intestine Large	intestine
29	chr8:118895400-118899200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr8:118895400-118899400	Enhancers	Liver	Liver
31	chr8:118895600-118897200	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr8:118895600-118897200	Enhancers	Aorta	Aorta
33	chr8:118895600-118900800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
34	chr8:118895800-118896600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr8:118895800-118896600	Flanking Active TSS	A549	lung
36	chr8:118895800-118896600	Strong transcription	NHEK	skin
37	chr8:118895800-118896800	Enhancers	Pancreas	Pancrea
38	chr8:118895800-118896800	Enhancers	Rectal Mucosa Donor 31	rectum
39	chr8:118895800-118897000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
40	chr8:118895800-118897200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr8:118895800-118897400	Enhancers	HUES6 Cell Line	embryonic stem cell
42	chr8:118895800-118897400	Enhancers	iPS-20b Cell Line	embryonic stem cell
43	chr8:118895800-118897600	Enhancers	ES-I3 Cell Line	embryonic stem cell
44	chr8:118896000-118896600	Enhancers	Rectal Mucosa Donor 29	rectum
45	chr8:118896000-118896800	Enhancers	Colonic Mucosa	Colon
46	chr8:118896000-118897000	Enhancers	Fetal Intestine Small	intestine
47	chr8:118896000-118897000	Weak transcription	NHLF	lung
48	chr8:118896000-118897200	Enhancers	HUES48 Cell Line	embryonic stem cell
49	chr8:118896000-118897200	Enhancers	iPS-15b Cell Line	embryonic stem cell
50	chr8:118896000-118901000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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