Variant report

Variant	rs28357277
Chromosome Location	chr8:118916467-118916468
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	8:118911988-118922970..8:119208477-119211356	GM12878	blood:

Extended variants
information (count: 89 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:80)

rs_ID	r²[population]
rs10097196	0.82[CHB][hapmap]
rs10106675	1.00[CEU][hapmap];0.96[CHB][hapmap];0.96[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1125103	0.80[CEU][hapmap];0.91[CHB][hapmap];0.82[JPT][hapmap];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11774623	0.96[CEU][hapmap];0.96[CHB][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11776292	0.82[CHB][hapmap];0.80[ASN][1000 genomes]
rs11776458	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11777220	0.87[ASN][1000 genomes]
rs11777874	0.96[CHB][hapmap];0.94[ASN][1000 genomes]
rs11780699	0.80[CEU][hapmap];0.91[CHB][hapmap];0.81[JPT][hapmap];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11781153	0.87[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.81[YRI][hapmap];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11781245	0.80[CEU][hapmap];1.00[CHB][hapmap];0.81[JPT][hapmap];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11783359	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11784409	0.96[CEU][hapmap];0.96[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11784466	1.00[CEU][hapmap];0.96[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11986974	0.82[CHB][hapmap]
rs12678309	0.83[CHB][hapmap]
rs12682332	1.00[CEU][hapmap];0.96[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13252084	0.87[CEU][hapmap];0.90[EUR][1000 genomes]
rs1462985	0.91[CHB][hapmap];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1542519	0.91[CHB][hapmap];0.81[JPT][hapmap];0.85[ASN][1000 genomes]
rs17430540	0.96[CEU][hapmap];0.96[CHB][hapmap];0.86[JPT][hapmap];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17430610	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[YRI][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17450835	0.96[CEU][hapmap];0.91[CHB][hapmap];0.86[JPT][hapmap];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17450856	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17450863	1.00[CEU][hapmap];0.96[CHB][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17450876	0.96[CEU][hapmap];0.96[CHB][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17452966	0.96[CEU][hapmap];0.96[CHB][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17453043	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17475190	1.00[CEU][hapmap];0.91[CHB][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17479600	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17503934	0.83[CHB][hapmap]
rs2447535	0.96[CHB][hapmap];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2447536	0.86[CHB][hapmap];0.89[JPT][hapmap];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2447537	0.80[CEU][hapmap];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2447538	0.81[CEU][hapmap];0.91[CHB][hapmap];0.83[ASN][1000 genomes]
rs2447539	0.81[CEU][hapmap];0.91[CHB][hapmap];0.85[ASN][1000 genomes]
rs2447540	0.87[CEU][hapmap];0.91[CHB][hapmap];0.80[JPT][hapmap];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2447541	0.87[CEU][hapmap];0.91[CHB][hapmap];0.85[ASN][1000 genomes]
rs2514719	0.91[CHB][hapmap];0.81[JPT][hapmap];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2514720	0.80[CEU][hapmap];0.96[CHB][hapmap];0.81[JPT][hapmap];0.85[ASN][1000 genomes]
rs28357271	0.96[CEU][hapmap];0.96[CHB][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28357275	1.00[CEU][hapmap];0.96[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs28357276	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3101574	0.80[CEU][hapmap];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4298514	0.83[CEU][hapmap];0.87[EUR][1000 genomes]
rs4391466	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4475517	0.90[EUR][1000 genomes]
rs4480148	0.87[CEU][hapmap];0.90[EUR][1000 genomes]
rs4541958	0.83[CEU][hapmap];0.91[CHB][hapmap];0.90[JPT][hapmap];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4602926	0.96[CEU][hapmap];0.96[CHB][hapmap];0.86[JPT][hapmap];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4621831	0.87[CEU][hapmap];0.90[EUR][1000 genomes]
rs4644291	0.87[EUR][1000 genomes]
rs4876777	0.91[CHB][hapmap];0.81[ASN][1000 genomes]
rs5005135	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56748438	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62521139	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62521140	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62521141	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6469716	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6469718	0.80[CEU][hapmap];0.87[EUR][1000 genomes]
rs6982505	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6985552	0.96[CEU][hapmap];0.96[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6999044	1.00[CEU][hapmap];0.96[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7007735	0.95[CEU][hapmap];0.91[CHB][hapmap];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7012890	0.96[CEU][hapmap];0.96[CHB][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7812722	0.82[CEU][hapmap]
rs7820452	0.96[CEU][hapmap];0.96[CHB][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7822297	1.00[CEU][hapmap];0.96[CHB][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7824327	0.96[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7824391	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7824395	0.96[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7824651	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7830840	0.82[CHB][hapmap]
rs7836747	0.96[CEU][hapmap];0.87[CHB][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7840309	0.91[CHB][hapmap];0.82[ASN][1000 genomes]
rs7842917	0.96[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7843515	0.95[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs958381	0.83[CEU][hapmap];0.91[CHB][hapmap];0.81[JPT][hapmap];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9656923	1.00[CEU][hapmap];0.96[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9656925	1.00[CEU][hapmap];0.96[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019636	chr8:118598433-118946091	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv539734	chr8:118598433-118946091	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv933516	chr8:118764605-119009093	Weak transcription Enhancers Genic enhancers Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv1030459	chr8:118840179-119155835	Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
5	nsv831440	chr8:118871930-119052269	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv891411	chr8:118891896-118942698	Weak transcription Genic enhancers Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv1032355	chr8:118896733-119003223	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv465785	chr8:118901928-118970300	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	nsv612046	chr8:118901928-118970300	Weak transcription Enhancers Genic enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:52 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:118881400-118917400	Weak transcription	Esophagus	oesophagus
2	chr8:118906000-118917600	Enhancers	NHLF	lung
3	chr8:118908000-118918200	Weak transcription	HSMMtube	muscle
4	chr8:118908800-118925800	Weak transcription	Duodenum Mucosa	Duodenum
5	chr8:118909600-118917600	Weak transcription	Pancreas	Pancrea
6	chr8:118909600-118922200	Weak transcription	Right Ventricle	heart
7	chr8:118909800-118923000	Weak transcription	Skeletal Muscle Female	skeletal muscle
8	chr8:118910200-118917000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr8:118910600-118917400	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr8:118911200-118917000	Weak transcription	Stomach Mucosa	stomach
11	chr8:118911200-118917600	Weak transcription	Sigmoid Colon	Sigmoid Colon
12	chr8:118911400-118917400	Weak transcription	Rectal Mucosa Donor 31	rectum
13	chr8:118911400-118921800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr8:118912000-118925800	Weak transcription	Duodenum Smooth Muscle	Duodenum
15	chr8:118913000-118918800	Weak transcription	Aorta	Aorta
16	chr8:118913000-118922000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr8:118913000-118922600	Weak transcription	Lung	lung
18	chr8:118913000-118923200	Weak transcription	Gastric	stomach
19	chr8:118913400-118918400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
20	chr8:118913400-118922600	Weak transcription	Stomach Smooth Muscle	stomach
21	chr8:118913400-118925600	Weak transcription	Colon Smooth Muscle	Colon
22	chr8:118913600-118918200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
23	chr8:118915000-118916600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr8:118915000-118917400	Weak transcription	HMEC	breast
25	chr8:118915000-118918600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr8:118915000-118919200	Weak transcription	Skeletal Muscle Male	skeletal muscle
27	chr8:118915200-118917600	Weak transcription	Liver	Liver
28	chr8:118915200-118918200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
29	chr8:118915200-118918200	Weak transcription	HSMM	muscle
30	chr8:118915400-118918200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
31	chr8:118915400-118918200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr8:118915400-118918200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
33	chr8:118915400-118918200	Weak transcription	NHEK	skin
34	chr8:118915400-118922400	Weak transcription	Fetal Heart	heart
35	chr8:118915600-118917400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
36	chr8:118915600-118917400	Weak transcription	Ovary	ovary
37	chr8:118915600-118918400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
38	chr8:118915600-118918400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
39	chr8:118915600-118922200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
40	chr8:118915800-118918000	Weak transcription	NH-A	brain
41	chr8:118915800-118918200	Weak transcription	HUES48 Cell Line	embryonic stem cell
42	chr8:118915800-118918200	Weak transcription	HUVEC	blood vessel
43	chr8:118915800-118918400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
44	chr8:118916200-118918400	Enhancers	Small Intestine	intestine
45	chr8:118916200-118925800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
46	chr8:118916400-118917000	Enhancers	NHDF-Ad	bronchial
47	chr8:118916400-118917000	Weak transcription	Osteobl	bone
48	chr8:118916400-118917400	Enhancers	A549	lung
49	chr8:118916400-118918200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
50	chr8:118916400-118918200	Weak transcription	Muscle Satellite Cultured Cells	--

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