Variant report

Variant	rs2514719
Chromosome Location	chr8:118943395-118943396
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 104 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:95)

rs_ID	r²[population]
rs10087446	0.91[CEU][hapmap]
rs10097196	0.88[CEU][hapmap];0.82[CHB][hapmap];0.85[JPT][hapmap];0.87[ASN][1000 genomes]
rs10105797	0.89[ASN][1000 genomes]
rs10106675	0.87[CHB][hapmap];0.81[JPT][hapmap];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10955841	0.81[EUR][1000 genomes]
rs10955846	0.88[CEU][hapmap];0.85[JPT][hapmap]
rs1125103	0.96[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11774623	0.87[CHB][hapmap];0.81[JPT][hapmap];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11776458	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11777220	0.91[ASN][1000 genomes]
rs11777874	0.87[CHB][hapmap];0.81[JPT][hapmap];0.85[ASN][1000 genomes]
rs11780699	0.96[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11781153	0.91[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11781245	0.96[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11783359	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11784409	0.87[CHB][hapmap];0.81[JPT][hapmap];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11784466	0.87[CHB][hapmap];0.81[JPT][hapmap];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12682332	0.87[CHB][hapmap];0.81[JPT][hapmap];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13256042	0.84[CEU][hapmap]
rs13260665	0.88[CEU][hapmap];0.85[JPT][hapmap]
rs1462985	1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1466429	0.91[CEU][hapmap]
rs1542519	0.91[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1564132	0.84[CEU][hapmap];0.85[JPT][hapmap]
rs17430540	0.87[CHB][hapmap];0.95[JPT][hapmap];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17430610	0.91[CHB][hapmap];0.81[JPT][hapmap];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17450835	0.82[CHB][hapmap];0.95[JPT][hapmap];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17450856	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17450863	0.87[CHB][hapmap];0.81[JPT][hapmap];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17450876	0.87[CHB][hapmap];0.81[JPT][hapmap];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17452966	0.87[CHB][hapmap];0.81[JPT][hapmap];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17453043	0.91[CHB][hapmap];0.81[JPT][hapmap];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17475190	0.82[CHB][hapmap];0.81[JPT][hapmap];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17479600	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2008799	0.88[CEU][hapmap];0.80[JPT][hapmap]
rs2199545	0.91[CEU][hapmap]
rs2219724	0.88[CEU][hapmap];0.80[JPT][hapmap]
rs2325820	0.85[JPT][hapmap]
rs2325821	0.83[ASN][1000 genomes]
rs2447535	1.00[CEU][hapmap];0.96[CHB][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2447536	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2447537	0.96[CEU][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2447538	0.88[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2447539	0.88[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2447540	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2447541	0.91[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2514720	0.96[CEU][hapmap];0.96[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs28357271	0.87[CHB][hapmap];0.81[JPT][hapmap];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs28357275	0.87[CHB][hapmap];0.81[JPT][hapmap];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs28357276	0.91[CHB][hapmap];0.81[JPT][hapmap];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs28357277	0.91[CHB][hapmap];0.81[JPT][hapmap];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3101574	0.96[CEU][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3860883	0.80[CEU][hapmap]
rs4298514	0.95[CEU][hapmap];0.99[EUR][1000 genomes]
rs4391466	0.91[CHB][hapmap];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4541958	0.95[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4602926	0.87[CHB][hapmap];0.95[JPT][hapmap];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4644291	0.99[EUR][1000 genomes]
rs4876771	0.81[CEU][hapmap]
rs4876774	0.92[CEU][hapmap];0.89[EUR][1000 genomes]
rs4876775	0.92[CEU][hapmap];0.88[EUR][1000 genomes]
rs4876777	0.96[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4876781	0.88[CEU][hapmap];0.80[JPT][hapmap]
rs4876782	0.91[CEU][hapmap]
rs4876783	0.91[CEU][hapmap]
rs4876784	0.87[CEU][hapmap]
rs5005135	0.91[CHB][hapmap];0.81[JPT][hapmap];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs56748438	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62521139	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62521140	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62521141	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6469716	0.91[CHB][hapmap];0.81[JPT][hapmap];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6469718	0.96[CEU][hapmap];0.99[EUR][1000 genomes]
rs6982505	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6985552	0.87[CHB][hapmap];0.81[JPT][hapmap];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6999044	0.87[CHB][hapmap];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7007735	0.82[CEU][hapmap];0.81[CHB][hapmap];0.85[JPT][hapmap];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7012890	0.87[CHB][hapmap];0.81[JPT][hapmap];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7812722	0.87[CEU][hapmap];0.90[EUR][1000 genomes]
rs7815972	0.81[ASN][1000 genomes]
rs7818831	0.81[CEU][hapmap];0.85[JPT][hapmap]
rs7820452	0.87[CHB][hapmap];0.81[JPT][hapmap];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7822297	0.87[CHB][hapmap];0.81[JPT][hapmap];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7824327	0.91[CHB][hapmap];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7824391	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7824395	0.91[CHB][hapmap];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7824651	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7836747	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7840309	1.00[CHB][hapmap];0.95[JPT][hapmap];0.96[ASN][1000 genomes]
rs7842917	0.91[CHB][hapmap];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7843515	0.82[CEU][hapmap];0.91[CHB][hapmap];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs958381	0.95[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9643120	0.88[CEU][hapmap];0.80[JPT][hapmap]
rs9656923	0.87[CHB][hapmap];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9656925	0.87[CHB][hapmap];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019636	chr8:118598433-118946091	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv539734	chr8:118598433-118946091	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv933516	chr8:118764605-119009093	Weak transcription Enhancers Genic enhancers Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv1030459	chr8:118840179-119155835	Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
5	nsv831440	chr8:118871930-119052269	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv1032355	chr8:118896733-119003223	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv465785	chr8:118901928-118970300	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv612046	chr8:118901928-118970300	Weak transcription Enhancers Genic enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	nsv612047	chr8:118939094-119468609	Flanking Active TSS Enhancers Genic enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:63 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:118933200-118943800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr8:118933200-118946600	Weak transcription	Gastric	stomach
3	chr8:118933600-118945600	Weak transcription	Stomach Smooth Muscle	stomach
4	chr8:118933600-118945800	Weak transcription	Right Atrium	heart
5	chr8:118933600-118946200	Weak transcription	Ovary	ovary
6	chr8:118933600-118946600	Weak transcription	Brain Germinal Matrix	brain
7	chr8:118933800-118946000	Weak transcription	Fetal Intestine Large	intestine
8	chr8:118935200-118946200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr8:118935200-118949800	Weak transcription	Psoas Muscle	Psoas
10	chr8:118935200-118958600	Weak transcription	Esophagus	oesophagus
11	chr8:118938000-118949800	Weak transcription	Primary hematopoietic stem cells	blood
12	chr8:118938800-118947600	Enhancers	HUES48 Cell Line	embryonic stem cell
13	chr8:118939400-118946600	Weak transcription	Fetal Muscle Leg	muscle
14	chr8:118939600-118946200	Weak transcription	Fetal Heart	heart
15	chr8:118940000-118945800	Weak transcription	Skeletal Muscle Male	skeletal muscle
16	chr8:118940200-118943600	Weak transcription	Small Intestine	intestine
17	chr8:118940200-118946400	Weak transcription	Rectal Mucosa Donor 31	rectum
18	chr8:118940400-118946000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr8:118940400-118946000	Weak transcription	Fetal Lung	lung
20	chr8:118940600-118943400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
21	chr8:118940600-118944600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
22	chr8:118940600-118944800	Weak transcription	H1 Cell Line	embryonic stem cell
23	chr8:118940600-118944800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr8:118940600-118946000	Weak transcription	Right Ventricle	heart
25	chr8:118940600-118946200	Weak transcription	Duodenum Mucosa	Duodenum
26	chr8:118940600-118946400	Weak transcription	Aorta	Aorta
27	chr8:118940600-118949400	Weak transcription	HSMM	muscle
28	chr8:118940800-118946600	Weak transcription	Osteobl	bone
29	chr8:118940800-118949600	Weak transcription	HepG2	liver
30	chr8:118941000-118947800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
31	chr8:118941200-118945600	Enhancers	HUES64 Cell Line	embryonic stem cell
32	chr8:118941200-118946200	Weak transcription	NH-A	brain
33	chr8:118941200-118949200	Weak transcription	Muscle Satellite Cultured Cells	--
34	chr8:118941400-118945600	Enhancers	H9 Cell Line	embryonic stem cell
35	chr8:118941400-118947600	Enhancers	HUES6 Cell Line	embryonic stem cell
36	chr8:118941600-118943800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
37	chr8:118941600-118944600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
38	chr8:118941600-118946000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
39	chr8:118941800-118945600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
40	chr8:118941800-118945800	Weak transcription	HMEC	breast
41	chr8:118941800-118946000	Weak transcription	NHDF-Ad	bronchial
42	chr8:118941800-118946400	Weak transcription	NHLF	lung
43	chr8:118941800-118946600	Weak transcription	Primary T cells fromperipheralblood	blood
44	chr8:118942000-118945000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
45	chr8:118942000-118945800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
46	chr8:118942000-118946000	Weak transcription	Primary T cells from cord blood	blood
47	chr8:118942000-118946200	Weak transcription	Adipose Nuclei	Adipose
48	chr8:118942000-118946400	Weak transcription	A549	lung
49	chr8:118942000-118946600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
50	chr8:118942000-118946600	Weak transcription	Primary T killer memory cells from peripheral blood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links