Variant report

Variant	rs11777455
Chromosome Location	chr8:121587017-121587018
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:121586914..121588422-chr9:132086514..132089138,2	MCF-7	breast:

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs12155872	0.85[ASN][1000 genomes]
rs13252011	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4242316	0.86[ASN][1000 genomes]
rs4870737	0.85[ASN][1000 genomes]
rs4871076	0.85[ASN][1000 genomes]
rs4871077	0.85[ASN][1000 genomes]
rs4871078	0.85[ASN][1000 genomes]
rs6986440	0.85[ASN][1000 genomes]
rs6986444	0.85[ASN][1000 genomes]
rs6988232	0.85[ASN][1000 genomes]
rs6990705	0.85[ASN][1000 genomes]
rs7007838	0.85[ASN][1000 genomes]
rs7814339	0.85[ASN][1000 genomes]
rs7815260	0.81[AMR][1000 genomes]
rs7823782	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7828804	0.82[ASN][1000 genomes]
rs7839237	0.85[ASN][1000 genomes]
rs7839984	0.85[ASN][1000 genomes]
rs7842050	0.86[EUR][1000 genomes]
rs7843835	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891421	chr8:121292407-121653902	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv1021757	chr8:121501179-121620441	Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
3	nsv539740	chr8:121501179-121620441	Strong transcription Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:63 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:121557800-121597400	Weak transcription	Osteobl	bone
2	chr8:121560600-121597000	Weak transcription	Stomach Smooth Muscle	stomach
3	chr8:121561000-121591600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
4	chr8:121561200-121596400	Weak transcription	Pancreas	Pancrea
5	chr8:121572400-121592000	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr8:121575200-121592800	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr8:121575600-121597000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr8:121575800-121587400	Weak transcription	NHDF-Ad	bronchial
9	chr8:121577600-121589000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
10	chr8:121579600-121587400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr8:121580400-121587800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr8:121580400-121593000	Strong transcription	Monocytes-CD14+_RO01746	blood
13	chr8:121581000-121592400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
14	chr8:121581000-121592400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr8:121581400-121593600	Strong transcription	HepG2	liver
16	chr8:121581600-121589200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr8:121582400-121588400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
18	chr8:121582600-121589600	Strong transcription	Primary monocytes fromperipheralblood	blood
19	chr8:121582800-121587400	Strong transcription	HSMMtube	muscle
20	chr8:121582800-121587800	Strong transcription	Primary T helper cells fromperipheralblood	blood
21	chr8:121582800-121589400	Strong transcription	Primary hematopoietic stem cells	blood
22	chr8:121582800-121593200	Strong transcription	Liver	Liver
23	chr8:121583200-121590600	Weak transcription	Psoas Muscle	Psoas
24	chr8:121583200-121597400	Weak transcription	Fetal Muscle Trunk	muscle
25	chr8:121583200-121598200	Weak transcription	Spleen	Spleen
26	chr8:121584200-121588200	Strong transcription	Primary T cells fromperipheralblood	blood
27	chr8:121584400-121587200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr8:121584400-121587400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr8:121584600-121587600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
30	chr8:121584600-121590000	Weak transcription	Rectal Mucosa Donor 31	rectum
31	chr8:121585000-121601600	Weak transcription	Fetal Lung	lung
32	chr8:121585200-121587400	Strong transcription	Fetal Kidney	kidney
33	chr8:121585200-121589600	Strong transcription	Primary T cells from cord blood	blood
34	chr8:121585400-121587600	Strong transcription	Primary neutrophils fromperipheralblood	blood
35	chr8:121585400-121588600	Strong transcription	Primary B cells from cord blood	blood
36	chr8:121585800-121587400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
37	chr8:121586000-121587400	Strong transcription	Primary B cells from peripheral blood	blood
38	chr8:121586000-121587400	Strong transcription	Skeletal Muscle Female	skeletal muscle
39	chr8:121586000-121587600	Strong transcription	Primary T helper naive cells from peripheral blood	blood
40	chr8:121586000-121587600	Strong transcription	Primary T killer naive cells fromperipheralblood	blood
41	chr8:121586000-121587600	Strong transcription	NHLF	lung
42	chr8:121586200-121587400	Strong transcription	Duodenum Smooth Muscle	Duodenum
43	chr8:121586200-121587600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
44	chr8:121586200-121588200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
45	chr8:121586400-121587200	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
46	chr8:121586400-121587200	Strong transcription	Duodenum Mucosa	Duodenum
47	chr8:121586400-121587200	Strong transcription	Fetal Intestine Small	intestine
48	chr8:121586400-121587200	Strong transcription	Sigmoid Colon	Sigmoid Colon
49	chr8:121586400-121587400	Strong transcription	Fetal Muscle Leg	muscle
50	chr8:121586400-121587400	Strong transcription	Rectal Mucosa Donor 29	rectum

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