Variant report

Variant	rs7007838
Chromosome Location	chr8:121629937-121629938
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:121628159..121631762-chr8:121633780..121636360,3	K562	blood:

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10091246	0.86[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs10955979	0.80[EUR][1000 genomes]
rs11777455	0.85[ASN][1000 genomes]
rs12155872	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13252011	0.86[ASN][1000 genomes]
rs4242316	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4870737	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4871076	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4871077	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4871078	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6986440	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6986444	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6987986	0.86[AMR][1000 genomes]
rs6988232	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6990705	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.81[YRI][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7009902	0.86[AMR][1000 genomes]
rs7814339	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7823782	0.95[CHB][hapmap];0.90[JPT][hapmap];0.87[ASN][1000 genomes]
rs7828804	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7839237	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7839984	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7843835	0.95[CHB][hapmap];0.90[JPT][hapmap];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891421	chr8:121292407-121653902	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv612113	chr8:121616345-121635396	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:121587800-121640600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr8:121588200-121642400	Weak transcription	Primary T cells fromperipheralblood	blood
3	chr8:121588600-121636600	Weak transcription	Primary B cells from cord blood	blood
4	chr8:121605800-121644400	Weak transcription	Gastric	stomach
5	chr8:121607600-121643000	Weak transcription	Fetal Intestine Large	intestine
6	chr8:121609600-121641000	Weak transcription	Lung	lung
7	chr8:121613200-121668000	Weak transcription	Pancreas	Pancrea
8	chr8:121613400-121637200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr8:121616000-121637200	Weak transcription	HSMM	muscle
10	chr8:121616600-121639000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
11	chr8:121618200-121634000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr8:121618400-121637200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr8:121619000-121633400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr8:121621600-121630200	Strong transcription	Liver	Liver
15	chr8:121621800-121644400	Weak transcription	Spleen	Spleen
16	chr8:121623000-121635000	Weak transcription	Duodenum Smooth Muscle	Duodenum
17	chr8:121623400-121637400	Weak transcription	H1 Cell Line	embryonic stem cell
18	chr8:121623400-121647600	Weak transcription	Fetal Intestine Small	intestine
19	chr8:121624400-121637200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
20	chr8:121625000-121642200	Weak transcription	Primary T helper cells fromperipheralblood	blood
21	chr8:121625000-121643600	Weak transcription	Primary T helper cells PMA-I stimulated	--
22	chr8:121625400-121636600	Strong transcription	HepG2	liver
23	chr8:121625600-121645400	Strong transcription	Monocytes-CD14+_RO01746	blood
24	chr8:121626200-121630200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr8:121626200-121630800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr8:121627000-121640400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
27	chr8:121627400-121630000	Enhancers	Cortex derived primary cultured neurospheres	brain
28	chr8:121627600-121635000	Weak transcription	Psoas Muscle	Psoas
29	chr8:121627600-121637200	Weak transcription	HSMMtube	muscle
30	chr8:121627800-121631800	Weak transcription	Skeletal Muscle Female	skeletal muscle
31	chr8:121627800-121635000	Weak transcription	Right Atrium	heart
32	chr8:121627800-121635200	Weak transcription	Aorta	Aorta
33	chr8:121627800-121637400	Weak transcription	H9 Cell Line	embryonic stem cell
34	chr8:121628200-121635000	Weak transcription	HUES48 Cell Line	embryonic stem cell
35	chr8:121628400-121635000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
36	chr8:121628400-121639600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
37	chr8:121628600-121673200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
38	chr8:121628800-121630200	Strong transcription	Primary monocytes fromperipheralblood	blood
39	chr8:121628800-121631000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
40	chr8:121629000-121630200	Strong transcription	Fetal Muscle Leg	muscle
41	chr8:121629200-121630200	Strong transcription	Primary T cells from cord blood	blood
42	chr8:121629200-121631400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
43	chr8:121629200-121643600	Weak transcription	Primary B cells from peripheral blood	blood
44	chr8:121629400-121630600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
45	chr8:121629400-121634000	Weak transcription	Left Ventricle	heart
46	chr8:121629400-121642600	Weak transcription	Fetal Muscle Trunk	muscle
47	chr8:121629400-121645200	Weak transcription	Fetal Stomach	stomach
48	chr8:121629600-121637000	Weak transcription	NHLF	lung
49	chr8:121629800-121630400	Strong transcription	Primary hematopoietic stem cells	blood

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