Variant report

Variant	rs7009902
Chromosome Location	chr8:121627029-121627030
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:121621876..121624440-chr8:121626414..121628538,2	MCF-7	breast:
2	chr8:121456024..121458883-chr8:121625908..121628453,2	K562	blood:

Variant related genes	Relation type
ENSG00000172172	Chromatin interaction
ENSG00000172167	Chromatin interaction

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10955976	0.87[ASN][1000 genomes]
rs10955978	0.81[ASN][1000 genomes]
rs12155872	0.83[AMR][1000 genomes]
rs3890759	1.00[CEU][hapmap]
rs4242315	0.95[CHB][hapmap];0.88[ASN][1000 genomes]
rs4242316	0.86[AMR][1000 genomes]
rs4330729	0.87[ASN][1000 genomes]
rs4451342	0.86[CHB][hapmap]
rs4480161	0.95[CHB][hapmap];0.88[ASN][1000 genomes]
rs4870734	0.95[CHB][hapmap];0.81[JPT][hapmap];0.91[ASN][1000 genomes]
rs4870737	0.85[AMR][1000 genomes]
rs4871075	0.86[ASN][1000 genomes]
rs4871076	0.95[MEX][hapmap];0.86[AMR][1000 genomes]
rs4871077	0.86[AMR][1000 genomes]
rs4871078	0.86[AMR][1000 genomes]
rs62526664	0.86[ASN][1000 genomes]
rs67339289	0.87[ASN][1000 genomes]
rs6981480	0.95[CHB][hapmap];0.87[ASN][1000 genomes]
rs6986440	0.83[AMR][1000 genomes]
rs6986444	0.95[MEX][hapmap];0.83[AMR][1000 genomes]
rs6987986	0.86[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6988232	0.95[MEX][hapmap];0.86[AMR][1000 genomes]
rs6990705	0.83[AMR][1000 genomes]
rs6997783	0.81[CHB][hapmap]
rs7007838	0.86[AMR][1000 genomes]
rs7015089	0.95[CHB][hapmap];0.86[ASN][1000 genomes]
rs7814339	0.86[AMR][1000 genomes]
rs7815260	0.86[ASN][1000 genomes]
rs7828804	0.80[AMR][1000 genomes]
rs7834651	0.86[ASN][1000 genomes]
rs7839237	0.83[AMR][1000 genomes]
rs7839984	0.86[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891421	chr8:121292407-121653902	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv612113	chr8:121616345-121635396	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:121587800-121640600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr8:121588200-121642400	Weak transcription	Primary T cells fromperipheralblood	blood
3	chr8:121588600-121636600	Weak transcription	Primary B cells from cord blood	blood
4	chr8:121602000-121627600	Weak transcription	Aorta	Aorta
5	chr8:121605800-121644400	Weak transcription	Gastric	stomach
6	chr8:121607600-121643000	Weak transcription	Fetal Intestine Large	intestine
7	chr8:121609600-121641000	Weak transcription	Lung	lung
8	chr8:121609800-121629000	Weak transcription	Fetal Muscle Leg	muscle
9	chr8:121609800-121629000	Weak transcription	Fetal Stomach	stomach
10	chr8:121610400-121627400	Weak transcription	Cortex derived primary cultured neurospheres	brain
11	chr8:121610800-121629800	Weak transcription	Primary hematopoietic stem cells	blood
12	chr8:121613200-121668000	Weak transcription	Pancreas	Pancrea
13	chr8:121613400-121637200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr8:121614800-121627600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr8:121616000-121637200	Weak transcription	HSMM	muscle
16	chr8:121616600-121639000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
17	chr8:121618000-121629000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr8:121618200-121634000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr8:121618400-121637200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr8:121619000-121633400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr8:121621600-121630200	Strong transcription	Liver	Liver
22	chr8:121621800-121629000	Weak transcription	Fetal Muscle Trunk	muscle
23	chr8:121621800-121644400	Weak transcription	Spleen	Spleen
24	chr8:121622000-121627400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
25	chr8:121623000-121635000	Weak transcription	Duodenum Smooth Muscle	Duodenum
26	chr8:121623400-121637400	Weak transcription	H1 Cell Line	embryonic stem cell
27	chr8:121623400-121647600	Weak transcription	Fetal Intestine Small	intestine
28	chr8:121624400-121637200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
29	chr8:121625000-121642200	Weak transcription	Primary T helper cells fromperipheralblood	blood
30	chr8:121625000-121643600	Weak transcription	Primary T helper cells PMA-I stimulated	--
31	chr8:121625400-121636600	Strong transcription	HepG2	liver
32	chr8:121625600-121645400	Strong transcription	Monocytes-CD14+_RO01746	blood
33	chr8:121626200-121627600	Strong transcription	Primary monocytes fromperipheralblood	blood
34	chr8:121626200-121627600	Enhancers	HSMMtube	muscle
35	chr8:121626200-121630200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
36	chr8:121626200-121630800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
37	chr8:121626400-121628800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
38	chr8:121626600-121627600	Strong transcription	NHLF	lung
39	chr8:121626600-121629200	Weak transcription	Primary T cells from cord blood	blood
40	chr8:121627000-121640400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood

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