Variant report

Variant	rs11778164
Chromosome Location	chr8:52659654-52659655
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10448019	0.82[EUR][1000 genomes]
rs12674620	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12676244	0.82[EUR][1000 genomes]
rs12678646	0.82[ASN][1000 genomes]
rs12678680	0.82[ASN][1000 genomes]
rs13261717	0.82[EUR][1000 genomes]
rs34067888	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34910552	0.83[EUR][1000 genomes]
rs35423247	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4311651	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4418329	0.81[AMR][1000 genomes]
rs4421347	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4425745	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4425746	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4442134	0.81[AMR][1000 genomes]
rs4554456	0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4626584	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4873592	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4873595	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7001968	0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs71512159	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs71513544	0.84[EUR][1000 genomes]
rs71513546	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7459977	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932026	chr8:51858658-52758574	Strong transcription Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv817615	chr8:52252405-53023384	Strong transcription Enhancers Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv1018429	chr8:52411443-52878946	Weak transcription Strong transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
4	nsv1034856	chr8:52411443-52886765	Flanking Active TSS Enhancers Strong transcription Genic enhancers Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
5	nsv890898	chr8:52579964-52680933	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:52644000-52665400	Weak transcription	Right Ventricle	heart
2	chr8:52658600-52661000	Weak transcription	Right Atrium	heart
3	chr8:52659600-52659800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links