Variant report

Variant	rs34910552
Chromosome Location	chr8:52647117-52647118
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10088109	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10101657	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10112473	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10113743	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10448019	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11778164	0.83[EUR][1000 genomes]
rs12541234	0.98[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12549383	0.98[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12676244	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12678094	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13252521	0.98[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs13259819	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13261717	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13439031	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2976204	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs34067888	0.83[EUR][1000 genomes]
rs34773755	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs35326600	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs35363824	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35423247	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4311651	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4377955	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4382468	0.87[EUR][1000 genomes]
rs4407875	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4517108	0.83[EUR][1000 genomes]
rs4541902	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4621801	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4636199	0.83[EUR][1000 genomes]
rs4873200	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4873570	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4873571	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4873576	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4873592	0.81[EUR][1000 genomes]
rs5000332	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6473634	0.81[EUR][1000 genomes]
rs6473637	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6473638	0.86[EUR][1000 genomes]
rs6987982	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6988401	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7010751	0.83[EUR][1000 genomes]
rs7012655	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7014372	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7018227	0.85[EUR][1000 genomes]
rs71512159	0.83[EUR][1000 genomes]
rs7459977	0.83[EUR][1000 genomes]
rs7830013	0.90[EUR][1000 genomes]
rs8180923	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9284000	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932026	chr8:51858658-52758574	Strong transcription Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv817615	chr8:52252405-53023384	Strong transcription Enhancers Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv1018429	chr8:52411443-52878946	Weak transcription Strong transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
4	nsv1034856	chr8:52411443-52886765	Flanking Active TSS Enhancers Strong transcription Genic enhancers Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
5	nsv890898	chr8:52579964-52680933	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	esv1817480	chr8:52643151-52654831	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:52637400-52650400	Weak transcription	Left Ventricle	heart
2	chr8:52644000-52665400	Weak transcription	Right Ventricle	heart
3	chr8:52646600-52647800	Enhancers	Fetal Lung	lung
4	chr8:52647000-52647600	Enhancers	Fetal Kidney	kidney

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