Variant report

Variant	rs11778668
Chromosome Location	chr8:99259792-99259793
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:99258977..99261249-chr8:99270985..99273813,2	MCF-7	breast:
2	chr8:99255307..99258219-chr8:99258829..99262487,4	MCF-7	breast:
3	chr8:99258147..99259845-chr8:99262430..99264831,2	K562	blood:

Variant related genes	Relation type
ENSG00000104361	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11781517	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11782558	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.89[TSI][hapmap];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13252923	1.00[CHD][hapmap]
rs1470767	1.00[CHD][hapmap]
rs2443578	1.00[CHD][hapmap]
rs6982941	0.84[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032904	chr8:98756076-99476925	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
2	nsv539687	chr8:98756076-99476925	Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
3	nsv831405	chr8:99095239-99260934	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
4	nsv6326	chr8:99221674-99263687	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:63 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:99226200-99267000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr8:99229400-99267000	Weak transcription	Left Ventricle	heart
3	chr8:99235400-99268400	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr8:99239400-99268600	Weak transcription	Aorta	Aorta
5	chr8:99240400-99264400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr8:99240400-99266200	Weak transcription	Fetal Stomach	stomach
7	chr8:99240600-99267000	Weak transcription	Gastric	stomach
8	chr8:99240600-99294200	Weak transcription	Ovary	ovary
9	chr8:99241000-99269400	Weak transcription	Fetal Intestine Small	intestine
10	chr8:99249000-99267800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr8:99253000-99264000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr8:99253200-99260400	Weak transcription	Right Atrium	heart
13	chr8:99253400-99273200	Weak transcription	Stomach Smooth Muscle	stomach
14	chr8:99255400-99264400	Weak transcription	H9 Cell Line	embryonic stem cell
15	chr8:99255400-99266200	Weak transcription	HSMM	muscle
16	chr8:99255600-99272000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr8:99255600-99272000	Weak transcription	NHEK	skin
18	chr8:99255800-99266200	Weak transcription	Spleen	Spleen
19	chr8:99255800-99271800	Weak transcription	HMEC	breast
20	chr8:99256000-99261000	Weak transcription	Muscle Satellite Cultured Cells	--
21	chr8:99256800-99260000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
22	chr8:99257400-99260000	Enhancers	ES-I3 Cell Line	embryonic stem cell
23	chr8:99257400-99260000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr8:99257600-99266200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr8:99258000-99260000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr8:99258000-99260000	Enhancers	HUES48 Cell Line	embryonic stem cell
27	chr8:99258000-99266000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
28	chr8:99258200-99259800	Enhancers	Adipose Nuclei	Adipose
29	chr8:99258200-99260200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
30	chr8:99258400-99260000	Enhancers	iPS-18 Cell Line	embryonic stem cell
31	chr8:99258600-99260200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr8:99258600-99268800	Weak transcription	NH-A	brain
33	chr8:99258600-99272000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
34	chr8:99258800-99260000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr8:99258800-99260400	Enhancers	NHDF-Ad	bronchial
36	chr8:99258800-99262600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
37	chr8:99259000-99259800	Enhancers	iPS-20b Cell Line	embryonic stem cell
38	chr8:99259000-99260000	Genic enhancers	Primary B cells from peripheral blood	blood
39	chr8:99259000-99260800	Enhancers	HUES6 Cell Line	embryonic stem cell
40	chr8:99259200-99259800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
41	chr8:99259200-99260000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
42	chr8:99259200-99260000	Strong transcription	Rectal Mucosa Donor 29	rectum
43	chr8:99259200-99260200	Enhancers	HUES64 Cell Line	embryonic stem cell
44	chr8:99259200-99260400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
45	chr8:99259200-99262000	Strong transcription	Primary hematopoietic stem cells	blood
46	chr8:99259200-99264800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
47	chr8:99259200-99272400	Weak transcription	Colonic Mucosa	Colon
48	chr8:99259400-99259800	Enhancers	H1 Cell Line	embryonic stem cell
49	chr8:99259400-99259800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr8:99259400-99259800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung

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