Variant report

Variant	rs6982941
Chromosome Location	chr8:99297875-99297876
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:99181135..99183759-chr8:99296172..99297898,2	MCF-7	breast:
2	chr8:99289436..99292094-chr8:99296657..99300194,3	MCF-7	breast:
3	chr8:99292875..99295082-chr8:99297516..99299407,3	K562	blood:
4	chr8:99293282..99295082-chr8:99297749..99299407,2	K562	blood:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs11778668	0.84[MEX][hapmap]
rs11782558	0.84[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032904	chr8:98756076-99476925	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
2	nsv539687	chr8:98756076-99476925	Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
3	nsv831406	chr8:99290745-99482076	Enhancers Bivalent/Poised TSS ZNF genes & repeats Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:99260400-99304400	Weak transcription	Duodenum Mucosa	Duodenum
2	chr8:99265400-99298400	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr8:99265400-99304200	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr8:99284600-99304600	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr8:99284800-99304600	Weak transcription	Primary hematopoietic stem cells	blood
6	chr8:99287600-99305000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr8:99287800-99303600	Weak transcription	Fetal Stomach	stomach
8	chr8:99289000-99303400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr8:99290800-99305400	Weak transcription	Aorta	Aorta
10	chr8:99291400-99305400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr8:99291800-99298400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr8:99291800-99304000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr8:99292600-99298200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr8:99293400-99304600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
15	chr8:99293600-99303800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
16	chr8:99293600-99304000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr8:99294800-99305400	Weak transcription	Right Atrium	heart
18	chr8:99295800-99298800	Enhancers	Fetal Intestine Large	intestine
19	chr8:99295800-99299600	Enhancers	HepG2	liver
20	chr8:99296000-99304000	Weak transcription	Osteobl	bone
21	chr8:99296400-99305400	Weak transcription	Ovary	ovary
22	chr8:99296400-99305600	Weak transcription	Left Ventricle	heart
23	chr8:99296400-99305600	Weak transcription	Lung	lung
24	chr8:99296400-99305600	Weak transcription	Pancreas	Pancrea
25	chr8:99297200-99304200	Weak transcription	Sigmoid Colon	Sigmoid Colon
26	chr8:99297400-99303800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr8:99297800-99298000	Weak transcription	Fetal Intestine Small	intestine
28	chr8:99297800-99298400	Enhancers	Primary B cells from peripheral blood	blood
29	chr8:99297800-99298600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr8:99297800-99305400	Weak transcription	Esophagus	oesophagus

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